Initiation of Protein Synthesis with Non‐Canonical Amino Acids In Vivo

By transplanting identity elements into E. coli tRNA^fMet, we have engineered an orthogonal initiator tRNA (itRNA^Ty2) that is a substrate for Methanocaldococcus jannaschii TyrRS. We demonstrate that itRNA^Ty2 can initiate translation in vivo with aromatic non‐canonical amino acids (ncAAs) bearing diverse sidechains. Although the initial system suffered from low yields, deleting redundant copies of tRNA^fMet from the genome afforded an E. coli strain in which the efficiency of non‐canonical initiation equals elongation. With this improved system we produced a protein containing two distinct ncAAs at the first and second positions, an initial step towards producing completely unnatural polypeptides in vivo. This work provides a valuable tool to synthetic biology and demonstrates remarkable versatility of the E. coli translational machinery for initiation with ncAAs in vivo.     

Recent Development in Ligation Methods for Glycopeptide and Glycoprotein Synthesis

Glycoproteins are produced by the post‐translational modification process of proteins and they play an important role in mediating various biological processes. Our understanding towards biochemical functions of individual glycoproteins has been seriously hampered due to the heterogeneous expression of carbohydrate parts in glycoproteins. Despite the advancement in recombinant expression and chromatographic techniques, the isolation of pure glycoforms remains nearly impossible. To obtain homogenous glycoproteins, tremendous efforts hves been spent in developing various ligation and glycosylation techniques. This minireview discusses selected methods for the preparation and ligation of glycopeptides. The importance of the development of new chemical synthesis method for glycoproteins has also been discussed, which would be one of the next directions in this field.     

Padé–Legendre approximants for uncertainty analysis with discontinuous response surfaces

A novel uncertainty propagation method for problems characterized by highly non-linear or discontinuous system responses is presented. The approach is based on a Padé–Legendre (PL) formalism which does not require modifications to existing computational tools (non-intrusive approach) and it is a global method. The paper presents a novel PL method for problems in multiple dimensions, which is non-trivial in the Padé literature. In addition, a filtering procedure is developed in order to minimize the errors introduced in the approximation close to the discontinuities. The numerical examples include fluid dynamic problems characterized by shock waves: a simple dual throat nozzle problem with uncertain initial state, and the turbulent transonic flow over a transonic airfoil where the flight conditions are assumed to be uncertain. Results are presented in terms of statistics of both shock position and strength and are compared to Monte Carlo simulations.     

Effect of graded triple delta-doped sheets on the performance of GaAs based dual channel pseudomorphic high electron mobility transistors

The characteristics of InGaP/InGaAs/GaAs dual channel pseudomorphic high electron mobility transistors (DCPHEMTs) with different graded triple delta-doped sheets are investigated and experimentally demonstrated. Based on a two-dimensional simulator of ATLAS, the band diagrams, electron densities and DC characteristics of studied devices are comprehensively analyzed. Due to the use of properly graded triple delta-doped sheets, good pinch-off and saturation characteristics, improved transport properties and wide current swing are obtained. For comparison, a practical DCPHEMT with good device performances is fabricated as well. It is found that the simulated data are in good agreement with experimental results.     

Cyclic Designs with Block Size 4 and Related Optimal Optical Orthogonal Codes

We prove the existence of a cyclic (4p, 4, 1)-BIBD—and hence, equivalently, that of a cyclic (4, 1)-GDD of type 4 ^p —for any prime such that (p–1)/6 has a prime factor q not greater than 19. This was known only for q=2, i.e., for . In this case an explicit construction was given for . Here, such an explicit construction is also realized for .We also give a strong indication about the existence of a cyclic (4p 4, 1)-BIBD for any prime , p>7. The existence is guaranteed for p>(2q ³–3q ²+1)²+3q ² where q is the least prime factor of (p–1)/6.Finally, we prove, giving explicit constructions, the existence of a cyclic (4, 1)-GDD of type 6 ^p for any prime p>5 and the existence of a cyclic (4, 1)-GDD of type 8 ^p for any prime . The result on GDD's with group size 6 was already known but our proof is new and very easy.All the above results may be translated in terms of optimal optical orthogonal codes of weight four with =1.     

On a problem of Byrnes concerning polynomials with restricted coefficients, II

As in the earlier paper with this title, we consider a question of Byrnes concerning the minimal length of a polynomial with all coefficients in which has a zero of a given order at . In that paper we showed that for all and showed that the extremal polynomials for were those conjectured by Byrnes, but for that rather than . A polynomial with was exhibited for , but it was not shown there that this extremal was unique. Here we show that the extremal is unique. In the previous paper, we showed that is one of the 7 values or . Here we prove that without determining all extremal polynomials. We also make some progress toward determining . As in the previous paper, we use a combination of number theoretic ideas and combinatorial computation. The main point is that if is a primitive th root of unity where is a prime, then the condition that all coefficients of be in , together with the requirement that be divisible by puts severe restrictions on the possible values for the cyclotomic integer .

     

新型高功率径向强流速调管振荡器

 提出了一种新结构的高功率径向强流速调管振荡器,该器件利用折叠式同轴谐振腔的微波场与接近空间电荷限制电流的径向电子束强烈相互作用产生高功率微波。首先对这种器件的实现机理进行了初步的分析，提出了有间隙电压情况时的径向同轴间隙的空间电荷限制电流1维近似估计模型。分析表明：对于电子束直流接近但小于直流空间限制电流的径向速调管，当有调制间隙电压时，空间限制电流要小于无调制间隙电压情况下的直流空间限制电流，径向强流电子束电流接近和超过空间电荷限制电流时会出现强烈的调制。然后用PIC程序对其特性进行了粒子模拟，在二极管输入电压500 kV、电子束电流为30 kA条件下，最终得到了峰值功率6 GW、频率1.3 GHz的微波输出。     

VICON程序模拟氧碘化学激光器3维喷管流场的可行性探讨

 用VICON程序对化学氧碘激光器(COIL)喷管冷流场进行了3维模拟，得出的计算区几何较准确地反映了模拟装置的几何变化。主气流方向和副气流方向的分点数反映出了此2维平面内的气动特性，对不同流量的模拟结果对比分析得出穿透过度与穿透不够一样，致使主副气流混合不好。对带化学反应的情况进行了模拟，显现出副气流从喷孔出来后穿进主气流的马蹄形结构的变化过程，这些说明VICON程序可用来模拟研究COIL喷管流场特性。     

Weight distributions of geometric Goppa codes

The in general hard problem of computing weight distributions of linear codes is considered for the special class of algebraic-geometric codes, defined by Goppa in the early eighties. Known results restrict to codes from elliptic curves. We obtain results for curves of higher genus by expressing the weight distributions in terms of -series. The results include general properties of weight distributions, a method to describe and compute weight distributions, and worked out examples for curves of genus two and three.

     

On the Characterization of Linear Uniquely Decodable Codes

A Uniquely Decodable (UD) Code is a code such that any vector of the ambient space has a unique closest codeword. In this paper we begin a study of the structure of UD codes and identify perfect subcodes. In particular we determine all linear UD codes of covering radius 2.