Facile Fabrication of PBS/CNTs Nanocomposite Foam for Electromagnetic Interference Shielding

In order to reduce the pollutants of environment and electromagnetic waves, environment friendly polymer foams with outstanding electromagnetic interference shielding are imminently required. In this paper, a kind of electromagnetic shielding, biodegradable nanocomposite foam was fabricated by blending poly (butylene succinate) (PBS) with carbon nanotubes (CNTs) followed by foaming with supercritical CO₂. The crystallization temperature and melting temperature of PBS/CNTs nanocomposites with 4 wt % of CNTs increased remarkably by 6 °C and 3.1 °C compared with that of pure PBS and a double crystal melting peak of various PBS samples appeared in DSC curves. Increasing the CNT content from 0 to 4 wt % leads to an increase of approximately 3 orders of magnitude in storage modulus and nearly 9 orders of magnitude in enhancement of electrical properties. Furthermore, CNTs endowed PBS nanocomposite foam with adjustable electromagnetic interference (EMI) shielding property, giving a specific EMI shielding effectiveness of 28.5 dB cm³/g. This study provides a promising methodology for preparing biodegradable, lightweight PBS/CNTs foam with outstanding electromagnetic shielding properties.     

A Chimeric DNA/RNA Antiparallel Quadruplex with Improved Stability

Nucleic acid quadruplexes are proposed to play a role in the regulation of gene expression, are often present in aptamers selected for specific binding functions and have potential applications in medicine and biotechnology. Therefore, understanding their structure and thermodynamic properties and designing highly stable quadruplexes is desirable for a variety of applications. Here, we evaluate DNA→RNA substitutions in the context of a monomolecular, antiparallel quadruplex, the thrombin-binding aptamer (TBA, GGTTGGTGTGGTTGG) in the presence of either K⁺ or Sr²⁺. TBA predominantly folds into a chair-type configuration containing two G-tetrads, with G residues in both syn and anti conformation. All chimeras with DNA→RNA substitutions (G→g) at G residues requiring the syn conformation demonstrated strong destabilization. In contrast, G→g substitutions at Gs with anti conformation increased stability without affecting the monomolecular chair-type topology. None of the DNA→RNA substitutions in loop positions affected the quadruplex topology; however, these substitutions varied widely in their stabilizing or destabilizing effects in an unpredictable manner. This analysis allowed us to design a chimeric DNA/RNA TBA construct that demonstrated substantially improved stability relative to the all-DNA construct. These results have implications for a variety of quadruplex-based applications including for the design of dynamic nanomachines.     

Adaptive neuro-fuzzy interference system modelling for chlorpyrifos removal with walnut shell biochar

Accumulation of chlorpyrifos (CP), a pesticide, causes a significant environmental problem in food, surface/ground waters further to human health. The removal of the CP pollutant in surface/wastewater could be achieved by biochar due to the improved physical and chemical properties. In this work, the CP removal capacities of biochar samples derived from walnut shells at various temperatures from 450 to 900 °C were investigated. The experiments were performed as laboratory batch type study and the adsorption efficiency was determined at various conditions such as adsorbent dosage (10–500 mg/L), sorbate concentrations (100–1500 µg/L), contact time (0–300 min), initial pH (3–10), and the number of recycle.By subtracting the pyrolysis temperature from 450 °C to 900 °C, the surface areas were found to increase from 12.9 m²/g to 353.3 m²/g, respectively.The 143 experimental data were evaluated by a pair of kinetics and isotherm models and the Adaptive Neural Fuzzy Inference System (ANFIS). The developed ANFIS model was 98.56% successful in predicting the CP removal efficiency depending on the adsorption conditions. Walnut Shell Biochar (WSBC) can be applied for CP adsorption with 86.64% removal efficiency under optimum adsorption conditions (adsorbent = 250 µg/L, sorbate = 1000 µg/L, pH = 7.07 and contact time 15 min) thanks to its improved porosity. It was determined that the biochar samples could be reused 5 times. Equilibrium adsorption was observed to conform to the Langmuir isotherm, and the maximum adsorption capacity for WSBC@900 was 3.536 mg/g.     

Ultrafast Fluorescence Spectroscopy via Upconversion and Its Applications in Biophysics

In this review, the experimental set-up and functional characteristics of single-wavelength and broad-band femtosecond upconversion spectrophotofluorometers developed in our laboratory are described. We discuss applications of this technique to biophysical problems, such as ultrafast fluorescence quenching and solvation dynamics of tryptophan, peptides, proteins, reduced nicotinamide adenine dinucleotide (NADH), and nucleic acids. In the tryptophan dynamics field, especially for proteins, two types of solvation dynamics on different time scales have been well explored: ~1 ps for bulk water, and tens of picoseconds for “biological water”, a term that combines effects of water and macromolecule dynamics. In addition, some proteins also show quasi-static self-quenching (QSSQ) phenomena. Interestingly, in our more recent work, we also find that similar mixtures of quenching and solvation dynamics occur for the metabolic cofactor NADH. In this review, we add a brief overview of the emerging development of fluorescent RNA aptamers and their potential application to live cell imaging, while noting how ultrafast measurement may speed their optimization.     

Aptamer Laden Liquid Crystals Biosensing Platform for the Detection of HIV-1 Glycoprotein-120

We report a label-free and simple approach for the detection of glycoprotein-120 (gp-120) using an aptamer-based liquid crystals (LCs) biosensing platform. The LCs are supported on the surface of a modified glass slide with a suitable amount of B40t77 aptamer, allowing the LCs to be homeotropically aligned. A pronounced topological change was observed on the surface due to a specific interaction between B40t77 and gp-120, which led to the disruption of the homeotropic alignment of LCs. This results in a dark-to-bright transition observed under a polarized optical microscope. With the developed biosensing platform, it was possible to not only identify gp-120, but obtained results were analyzed quantitatively through image analysis. The detection limit of the proposed biosensing platform was investigated to be 0.2 µg/mL of gp-120. Regarding selectivity of the developed platform, no response could be detected when gp-120 was replaced by other proteins, such as bovine serum albumin (BSA), hepatitis A virus capsid protein 1 (Hep A VP1) and immunoglobulin G protein (IgG). Due to attributes such as label-free, high specificity and no need for instrumental read-out, the presented biosensing platform provides the potential to develop a working device for the quick detection of HIV-1 gp-120.     

Cooperative spectrum sharing MIMO systems with successive decoding

A spectrum sharing system with primary and secondary nodes, each equipped with an arbitrary number of antennas, is investigated. Particularly, the outage performance of an underlay cognitive system is analytically studied, in the case when the end-to-end ($e2e$) communication is established via an intermediate relay node. To better enhance the $e2e$ communication, successive interference cancellation (SIC) is adopted, which compensates for both the transmission power constraint and the presence of interference from primary nodes. Both the relay and secondary receiver perform unordered SIC to successively decode the multiple streams, whereas the decode-and-forward relaying protocol is used for the $e2e$ communication. New closed-form expressions for the $e2e$ outage performance of each transmitted stream are derived in terms of finite sum series of the Tricomi confluent hypergeometric function. In addition, simplified yet tight approximations for the asymptotic outage performance are obtained. Useful engineering insights are manifested, such as the diversity order of the considered system and the impact of interference from the primary nodes in conjunction with the constrained transmission power of the secondary nodes.     

Modeling DNA beacons at the mesoscopic scale

We report model calculations on DNA single strands which describe the equilibrium dynamics and kinetics of hairpin formation and melting. Modeling is at the level of single bases. Strand rigidity is described in terms of simple polymer models; alternative calculations performed using the freely rotating chain and the discrete Kratky-Porod models are reported. Stem formation is modeled according to the Peyrard-Bishop-Dauxois Hamiltonian. The kinetics of opening and closing is described in terms of a diffusion-controlled motion in an effective free-energy landscape. Melting profiles, dependence of melting temperature on loop length, and kinetic time scales are in semiquantitative agreement with experimental data obtained from fluorescent DNA beacons forming poly(T) loops. Variation in strand rigidity is not sufficient to account for the large activation enthalpy of closing and the strong loop length dependence observed in hairpins forming poly(A) loops. Implications for modeling single strands of DNA or RNA are discussed.