Structure-property modelling of complex formation of strontium with organic ligands in water

The method of substructural molecular fragments based on representation of the molecular graph by ensembles of fragments and involving calculations of those contributions to the given property is applied to the modelling of stability constants of the complexes of strontium(II) with organic ligands in water. Reliability of predictions of developed structure-property models was examined using three different test sets of structurally diverse ligands. The obtained models have been used for generation and screening of combinatorial library of virtual ligands. Some hypothetical efficient Sr(II) binders were suggested.     

Solution- and bound-state conformational study of N,N',N"-triacetyl chitotriose and other analogous potential inhibitors of hevamine: application of trNOESY and STD NMR spectroscopy

The solution-state conformations of N,N',N"-triacetyl chitotriose (1) and other potential chitinase inhibitors 2-4 were studied using a combination of NMR spectroscopy (NOESY) and molecular mechanics calculations. Determination solely of the global energy minimum conformation was found to be insufficient for an agreement with the NMR results. An appropriate consistency between the NMR experimental data and theoretical calculations was only reached by assessing the structures as population-weighted average conformers based on Boltzmann distributions derived from the calculated relative energies. Analogies, but also particular differences, between the synthetic compounds 2-4 and the naturally-occurring N,N',N"-triacetyl chitotriose were found. Furthermore, the conformation of compounds 1 and 2 when bound to hevamine was also studied using transferred NOESY experiments and the binding process was found to impart a level of conformational restriction on the ligands. The preferred conformation as determined for 1 in the bound state to hevamine belonged to one of the conformational families found for the compound when free in solution, although full characterisation of the bound-state conformations was impeded due to severe signal overlap. Saturation transfer difference NMR experiments were also employed to analyse the binding epitopes of the bound compounds. We thus determined that it is mainly the acetyl amido groups of the trisaccharide and the heterocyclic moiety which are in close contact with hevamine.     

Hydrolysis and Condensation of Transition Metal Alkoxide: Experiments and Simulations

We present here an experimental and numerical study of the chemical and aggregative mechanisms for titanium alkoxide in a reverse micellar medium. NMR experiments were done to study the first step of the sol-gel process: hydrolysis of titanium isopropoxide. Light and X-ray scattering experiments were then conducted to characterize the clustering of aggregates and aggregation kinetics. Fractal dimension, measured by U.S.A.X.S., varies with the hydrolysis ratio and the hydration of the surfactant. This evolution was explained by polydispersity of the hydrolysis which depends on the surfactant concentration. This hypothesis was tested through a numerical simulation of irreversible aggregation using a chemically limited aggregation model. The hydrolyzed sites are distributed among the monomers by a random procedure governed by a polydispersity parameterp, varying from 0 to 1. The total number of hydrolyzed sites is governed by a parameterq belonging to the interval [0, 1]. Thep-q evolution of the fractal dimension coincides rather well with the experimental data in all the region of the two dimensional phase space.     

A model for the etching of Si in CF4 plasmas: Comparison with experimental measurements

A model has been developed to describe the chemistry which occurs in CF₄ plasmas and the etching of Si both in the plasma and downstream. One very important feature of this model is that for discharge residence times which vary by more than an order of magnitude, the amount of CF₄ consumed is low and relatively constant. This is because the gas-phase combination reactions between F and both CF₃ and CF₂ lead to the rapid reforming of CF₄. The model predicts that CF₂ is a major species in the gas phase and that the [F] detected as a sample point downstream is a very sensitive function of [CF₂]/[F] in the discharge. Even though the calculations show that [F] in the discharge varies only slightly over the wide range of experimental conditions considered, large variations in [F] at the sample point occur because the [CF₂]/[F] ratio in the discharge changes. The concentrations of C₂F₆ and SiF₄ are predicted to within a factor of 2 over a very wide range of experimental conditions. This confirms the importance of gas-phase free radical reactions in the etching of Si.     

Computational Modelling of the Behaviour of Potentiometric Membrane Biosensors

This paper presents a mathematical model of a potentiometric biosensor based on a potentiometric electrode covered with an enzyme membrane. The model is based on the reaction–diffusion equations containing a non-linear term related to theMichaelis–Menten kinetics of the enzymatic reaction. Using computer simulation the influence of the thickness of the enzyme membrane on the biosensor response was investigated. The digital simulation was performed using the finite difference technique. Results of the numerical simulation were compared with known analytical solutions.      

Drying and pyrolysis of wood particles: experiments and simulation

The objective of this study is to develop a flexible and stable numerical method to predict the thermal decomposition of large wood particles due to drying and pyrolysis. At a later stage, this model is applied to each particle of a packed bed and thus, forms the entire packed bed process as a sum of individual particle processes. Therefore, this approach can deal with particles of different sizes, shapes and properties. A general formulation of the conservation equations allows the geometry of a fuel particle to be treated as a plate, cylinder or sphere. The various processes such as heat-up, drying and pyrolysis are described by a set of one-dimensional and transient conservation equations for mass and energy. This allows for simultaneous processes e.g. reactions in time and covers the entire range between transport-limited (shrinking core) and kinetically limited (reacting core) reaction regimes. The particles interact with a gas phase by heat and mass transfer taking into account the Stefan correction due to the gas outflow during conversion. Experiments carried out span a temperature range between T=300 and 900 °C for particle sizes varying between 8 and 17 mm. A comparison between measurements and predictions of drying models yielded satisfactory agreement only for the constant evaporation temperature model and thus, indicating, that the drying process is transport limited by heat transfer for large wood particles. Likewise, predicted results of pyrolysis for the above-mentioned range of temperatures and sizes agreed satisfactorily with measurements.     

Ion-Pair Solvent Extraction of EDTA Anions with Tetraalkylammonium Ions in Various Organic Solvents

Summary.  The ion-pair solvent extraction behavior of ethylenediaminetetraacetate (EDTA) anion by various tetraalkylammonium ions was investigated at 25.0 ± 0.1°C. The extraction of EDTA exceeded 90% from the basic aqueous solution into the organic solvents such as n-hexane and benzene derivatives containing tri-n-octylmethylammonium chloride, but EDTA was hardly extracted from acidic solution. Among the chemical species of EDTA in aqueous solution, edta ⁴⁻ is the most extractable one. On the other hand, the extraction of EDTA was less than 1% into chloroform and 1,2-dichloroethane even from the basic aqueous solution. The effect of the structure of alkylammonium ion was also examined. Tetra-n-hexylammonium and tetra-n-octylammonium ions could not extract EDTA even from the basic aqueous solution, while the use of tri-n-octylmethylammonium and di-n-lauryldimethylammonium ions enhances the extraction of EDTA. These results suggest that the steric hindrance in the ion-pair of alkylammonium and EDTA anion in the organic phase affects the extractability of EDTA containing ion-pair. The solution structure of ion-pair in the organic phase was calculated by MMFF force field and the steric effect in the ion-pair was also suggested. From the extraction constants obtained, the possibility of the extraction separation of EDTA has been shown. Present address: Chemistry Department, Heilongjiang University, Harbin, China     

Evaluation of a complete HPLC solvent optimization system involving piece-wise quadratic modelling

Summary Interpretive methods are accepted to give the best possible results for selectivity optimization in HPLC. However the methods are very complex, and most work so far has been detailed academic studies. This paper describes an evaluation of a complete integrated system incorporating peak labelling, modelling of retention behaviour and calculation of response surfaces, with particular emphasis on the retention modelling. The peak labelling section has been discussed previously.A piece-wise quadratic function is investigated for the modelling of retention times across an isoeluotropic plane to effect selectivity optimization in HPLC. This requires 10 data-points on the isoeluotropic plane. The predicted global optimum and local optima are evaluated by comparison of calculated and experimental retention data, for a nine component sample. Seven interstitial points, distributed across the whole plane between the data-points, are similarly evaluated for a related sample. The typical error (in retention time) is less than 2%, often 1%, and the maximum error is 4.2%. At the global optimum the error was found be less than 1.3% for all 9 peaks.     

Reaction and mass transfer effects in a catalytic monolith reactor

Zeolite-based monoliths (Cu/ZSM-5 on cordierite) are prepared and used to catalyze direct decomposition of nitrogen monoxide. Two-dimensional heterogeneous model is applied to describe the behavior of the monolith reactor, with the emphasis on the features introduced due to coupling of flow, mass transfer and chemical reaction. The proposed model has been verified by comparing computer simulation data with laboratory experimental data. It is shown that both inter- and intraphase diffusion limitations have to be considered when modeling complex reactor configuration, such as monolith reactors, especially when monolith with thicker catalytic layer are used at higher temperatures.