Batch tautomer generation with MolTPC

Besides all their conformational degrees of freedom, drug‐like molecules and natural products often also undergo tautomeric interconversions. Compared to the huge efforts made in experimental investigation of tautomerism, open and free algorithmic solutions for prototropic tautomer generation are surprisingly rare. The few freely available software packages limit their output to a subset of the possible configurational space by sometimes unwanted prior assumptions and complete neglection of ring‐chain tautomerism. Here, we describe an adjustable fully automatic tautomer enumeration approach, which is freely available and also incorporates the detection of ring‐chain variants. The algorithm is implemented in the MolTPC framework and accessible on SourceForge. © 2013 Wiley Periodicals, Inc.     

Evaporation from Three Single‐Compound Phases in Equilibrium

The evaporation paths in a system of three single‐compound phases in equilibrium were calculated using a phase diagram approach assuming the evaporation rate proportional to the compound's vapor pressure and molecular weight. The variation with time of the weight of the individual phases was linear, while the weight fraction was not. The approach allowed a simple calculation of the fraction of remaining compounds after one of them was exhausted during the evaporation and a convenient graphical illustration of the importance of the relative vapor pressures.     

Geranyl Acetate Emulsions: Surfactant Association Structures and Stability

The phase diagram of fragrance oil, geranyl acetate, water, and a surfactant, Laureth 4, was used to calculate the surfactant association structures present in emulsions with constant O/W ratio for increased fractions of surfactant. The liquid crystal appeared in the emulsion at a critical value of the surfactant fraction and additional surfactant caused an approximately linear increase of it, while the fraction of the aqueous phase experienced a corresponding reduction. The result of the calculations was confirmed by optical microscopy observation with the samples between crossed polarizers. The calculations revealed the formation of vesicles from the liquid crystal to result in a drastic reduction of the “free” aqueous phase, due to the amount of the aqueous liquid forming the core of the vesicle.     

An Automatic Molecular Dispenser of Chloride

The combined activity of the 1.1.1‐cryptand and of a dicopper(II) bistren cryptate complex including chloride makes the Cl^? ion be continuously and slowly delivered to the solution, without any external intervention. The 1.1.1‐cryptand slowly releases OH^? ions, according to a defined kinetics, and each OH^? ion displaces a Cl^? ion from the cryptate. Chloride displacement induces a sharp colour change from bright yellow to aquamarine and can be conveniently monitored spectrophotometrically, even in diluted solutions. The 1.1.1‐cryptand is the motor of a molecular dispenser (the dicopper(II) cryptate) delivering chloride ion automatically, from the inside of the solution.     

Between Two Chairs: Combination of Theory and Experiment for the Determination of the Conformational Dynamics of Xylosides

The conformational properties of monosaccharides constitute fundamental features of oligosaccharides. While the energy landscape of monosaccharides can be altered by a specific biochemical environment or by chemical modifications, the analysis of resulting dynamic conformational equilibria is not feasible by experimental means alone. In this work, a series of β-d -xylopyranosides is used to outline how a combination of experimental NMR parameters and computed molecular properties can be used to determine conformers and quantify the composition of conformational equilibria. We demonstrate that identifying the most stable conformers using energy calculations is challenging and computing of NMR shieldings is typically not sensitive enough. On the other hand, computed spin-spin coupling constants for the xyloside ring can be used to unambiguously assign experimental NMR data of dynamic conformational equilibria and quantify the ratio of different conformers in the mixture. As a proof of principle, this procedure allowed to analyze a hitherto unknown dynamic equilibrium of a diamino-xyloside as a precursor of a molecular switch.     

Activity coefficients and excess Gibbs’ energies of the binary mixtures formed by 2-cyanopyrazine with some chloroaliphatics at 95.5 kPa

Bubble points at a pressure of 95.5?kPa, over the entire composition range are measured for the binary mixtures formed by 2-cyanopyrazine with: 1,2-dichloroethane, 1,1,2,2-tetrachloroethane, trichloroethylene and tetrachloroethylene making use of a Swietoslawski type ebulliometer. The liquid phase composition versus temperature measurements are found to be well represented by the Wilson model. Computed values of the activity coefficients and excess Gibbs’ energies are also presented along with the phase equilibrium data.     

Proton transfer rate‐equilibria in apolar aprotic solvents: a historical perspective

Low dielectric constant apolar aprotic solvents, although employed on a limited scale for studying proton transfer reactions as compared with commonly used polar protic or dipolar aprotic ones, offer some particular advantages, namely, specific solute–solvent interactions are virtually eliminated and proton transfer occurs directly in an apolar aprotic solvent. An intriguing feature of these reactions is their general acid‐catalyzed/base‐catalyzed kinetics with a time scale over microseconds to minutes. In fact, the true or intrinsic relative strengths of acids/bases when measured in such solvents come to the fore much more clearly than those obtained in other classes of solvents. Recently, a review documenting the post‐1980 developments relating to proton transfer reactions in apolar aprotic solvents has been published. The present article is a commentary of the pre‐1980 developments in this area since the 1920s Brønsted–Lowry's “proton cult” of acid–base theory. Copyright © 2016 John Wiley & Sons, Ltd.     

Molar excess free energy of mixing of 1-propanol or 2-propanol with cyclohexane at 298.15 and 308.15 K in terms of association model with a Flory contribution term

Excess molar Gibbs free energies of mixing for 1-propanol or 2-propanol + cyclohexane over the whole composition range at 298.15 and 308.15 K have been calculated from vapour pressure data measured by static method. The data have been analysed in terms of a Mecke-Kempter association model with a Flory contribution term.     

Fluid multiphase equilibria and critical phenomena in binary and ternary mixtures of carbon dioxide, certain n-alkanols and tetradecane

Experimental results of fluid multiphase equilibria occurring in ternary mixtures of near-critical carbon dioxide, certain n-alkanols and tetradecane are presented. The following n-alkanols were used in this investigation: decanol, octanol, heptanol, hexanol and pentanol. In the ternary systems with decanol, octanol or heptanol a closed loop liquid-vapor two-phase region in the three-phase surface liquid-liquid-vapor was found. As far as the ternary system with decanol is concerned, this phenomenon is in agreement with an earlier and unexpected finding of Patton et al. (1993). In addition, it was also found in this study that the phase diagrams of the ternary mixtures with hexanol or pentanol as the n-alkanol show further complications.