Synthesis and antimicrobial bioassays of 1,3,4-thiadiazole sulfone derivatives containing amide moiety: A study based on molecular dynamics (MD) simulations,MM/GBSA,and molecular docking

The backbone structure (1,3,4-thiadiazole sulfone derivatives containing amide moiety) of target compounds was determined by modification and optimization of the theoretical design based on commercial chemical carboxin, including molecular docking, scaffold hopping, ligand expansion, etc.In this paper, 23 target compounds were synthesized by the combination of theoretical design and chemical synthesis, and characterized by ¹H NMR, ¹³C NMR and HR MS. Addtionally, the antibacterical bioassay showed that most target compounds performed excellent inhibition on Xanthomonas axonopodis pv. citri (Xac) and Xanthomonas oryzae pv. oryzae (Xoo) in vitro. Meanwhile, molecular docking, molecular dynamics (MD) simulations, and studies on ligand/protein (carboxin/2FBW and 4n/2FBW) complex systems were displayed, and the interaction patterns of ligand/protein complex system were predicted by molecular docking. Besides, the ligand/protein complex system was subject to MD simulation. The analysis of molecular dynamics such as RMSD values suggested that compound/2FBW complexes were stable. MM/GBSA (Molecular mechanics generalized born surface area) dynamic binding affinity results revealed that the active residues (TYR58, HIS26, ARG43, SER39, etc.) played an essential part in the binding of the compound(s) to form a stable low-energy ligand/protein complex, while the MD trajectories demonstrated that the interactions of drugs with 2FBW affected the tertiary structure and increased the stability of protein. Besides, compound 4n also showed control efficacies (curative and protective) on Xoo in vivo, where the curative efficacy was 35.91% and the protective efficacy was 18.97%. In a word, this study showed that 1,3,4-thiadiazole sulfone derivatives containing amide moiety designed based on the structure of carboxin were promising agricultural antibacterial agents, featuring certain stability of binding affinity to proteins and carboxin.     

Nanochannels and nanodroplets in polymer membranes controlling ionic transport

Polymer materials with low water uptake exhibit a highly heterogeneous interior characterized by water clusters in the form of nanodroplets and nanochannels. Here, based on our recent insights from computer simulations, we argue that the water cluster structure has large implications for ionic transport and selective permeability in polymer membranes. Importantly, we demonstrate that the two key quantities for transport, the ion diffusion and the solvation free energy inside the polymer, are extremely sensitive to molecular details of the water clusters. In particular, we highlight the significance of water droplet interface potentials and the nature of hopping diffusion through transient water channels. These mechanisms can be harvested and fine-tuned to optimize selectivity in ionic transport in a wide range of applications.     

Removal of low-concentration benzene in indoor air with plasma-MnO2 catalysis system

Non-thermal plasma (NTP) and combined plasma-MnO₂ catalytic (CPMC) air cleaners were tested for removal of low-concentration benzene in air. Both air cleaners were made of stainless steel needle matrix plate and used DC corona discharger. The effects of discharge power and relative humidity (RH) on benzene removal efficiency were investigated in a closed chamber. The intermediate products produced in purification processes were analyzed using gas chromatography-mass spectrometer (GC-MS). The concentrations of discharge byproducts and CO₂ selectivity produced in both processes were also compared. It was found that the benzene removal efficiency increased with discharge power in both systems; With the increase of RH in air, benzene removal efficiency firstly increased and then decreased in NTP while it gradually decreased in CPMC. For a fixed discharge power of 9 W and RH of 20% in CPMC, the conversion of benzene increased from 82.9% to 89.6%, the CO₂ selectivity increased from 38% to 80%, the concentration of O₃ decreased from 25.3 ppm to 1.3 ppm, and NO₂ formation decreased from 234 ppm to 25.7 ppm, compared with NTP.     

Sulfur removal from bauxite water slurry (BWS) electrolysis intensified by ultrasonic

Effects of ultrasonic on desulfurization ratio from bauxite water slurry (BWS) electrolysis in NaOH solution were examined under constant current. The results indicated that ultrasonic improved the desulfurization ratio at high temperatures because of the diffusion and transfer of oxygen gas in electrolyte. However, due to the increase in oxygen gas emission, ultrasonic could not improve the desulfurization ratio obviously at low temperatures. Additionally, the particle size of bauxite became fine in the presence of ultrasonic, indicating that the mass transfer of FeS₂ phase was improved. According to the polarization curves, the current density increased in the presence of ultrasonic, indicating that the mass transfer of liquid phase was improved. The apparent activation energy (AAE) of electrode reaction revealed that ultrasonic did not change the pathway of water electrolysis. However, ultrasonic changed the pathway of BWS electrolysis, converting indirect oxidation into direct oxidation. The AAE of BWS electrolysis in the presence of ultrasonic was higher than that in the absence of ultrasonic. And the low AAEs (less than 20 kJ/mol) clearly indicated the diffusion control during BWS electrolysis reaction.     

Carbohydrate derived bicyclic azetidin-3-ones as scaffolds for highly functionalized azetidines

Bicyclic azetidin-3-ones with no acidic α-hydrogens, prepared in good yields via cis-2,4-di-O-triflates of pyranosides, are stable divergent intermediates for the synthesis of highly substituted azetidines, as illustrated by the synthesis of (2R,3R,4R)-3-hydroxy-4-(hydroxymethyl)-3-methylazetidine-2-carboxylic acids. Preliminary studies on the reactions of bicyclic azetidinones indicate their potential as scaffolds for novel complex azetidines.     

Efficient removal for multiple pollutants via Ag2O/BiOBr heterojunction: A promoted photocatalytic process by valid electron transfer pathway

Multiple pollutants including pathogenic microorganism contaminations and emerging organic contaminations (EOCs) have shown a growing threat to the environment, especially the natural waters. However, the control and removal of pathogenic microorganism contaminations and EOCs have been greatly limited since limited knowledge of their environmental behaviors. Thus, a novel and efficient photocatalyst Ag₂O/BiOBr heterojunction was synthesized and used for removal of multiple pollutants including Escherichia coli (E. coli), Staphylococcus aureus (S. aureus), tetracycline and acetaminophen under visible light. The results showed that there were valid electron transfer pathways between BiOBr and Ag₂O, the main electron transfer direction was the BiOBr to Ag₂O. Photo-generated electrons were stored in Ag₂O and thus separation efficiency between holes and photo-generated electrons was obviously enhanced. Active oxygen species were highly produced and eventually end up with the high efficiency of removal of multiple pollutants. For Ag₂O/BiOBr with Ag₂O content at 3% (the best performance) under visible light, log decrease of E. coli was 7.16 (removal efficiency was 100%) in 120 min, log decrease of S. aureus was 7.23 (removal efficiency was 100%) in 160 min, C/C₀ of tetracycline was 0.06 in 180 min, C/C₀ of acetaminophen was 0.17 in 180 min. This work could provide a promising candidate in the actual contaminated natural waters for cleaning multiple pollutants.     

Electrochemical devices obtained from biochar: Advances in renewable and environmentally-friendly technologies applied to analytical chemistry

Biochar is the carbon-rich material produced from organic feedstock such as agricultural wastes and municipal solid waste in limited oxygen atmosphere and under certain thermal combustion. Due to its high carbon content, high cation exchange capacity, large surface and stability structure, it has been applied in different field of knowledge. In relation to environment analytical chemistry the studies about biochar majorly focus in degradation of contaminants and soil and water remediation. However, due to its excellent electrical conductivity, biochar has been also applied to the manufacture of sensitive, robust, efficient and inexpensive devices applied to supercapacitor-based energy storage and chemically modified electrodes or sensors. Therefore, this review describes about obtention, modification and characterization of biochar as well as the pertinent aspects of electrochemical devises based on biochar and a general discussion about the environmental concern of biochar, challenges and prospects.     

Principles of Surface Potential Estimation in Mixed Electrolyte Solutions:Taking into Account Dielectric Saturation

The dielectric properties between in-particle/water interface and bulk solution are significantly different, which are ignored in the theories of surface potential estimation. The analytical expressions of surface potential considering the dielectric saturation were derived in mixed electrolytes based on the nonlinear Poisson-Boltzmann equation. The surface potentials calculated from the approximate analytical and exact numerical solutions agreed with each other for a wide range of surface charge densities and ion concentrations. The effects of dielectric saturation became important for surface charge densities larger than 0.30 C/m\begin{document}$ ^2 $\end{document}. The analytical models of surface potential in different mixed electrolytes were valid based on original Poisson-Boltzmann equation for surface charge densities smaller than 0.30 C/m\begin{document}$ ^2 $\end{document}. The analytical model of surface potential considering the dielectric saturation for low surface charge density can return to the result of classical Poisson-Boltzmann theory. The obtained surface potential in this study can correctly predict the adsorption selectivity between monovalent and bivalent counterions.     

Simulation of proppant transport at intersection of hydraulic fracture and natural fracture of wellbores using CFD-DEM

Proppants transport is an advanced technique to improve the hydraulic fracture phenomenon, in order to promote the versatility of gas/oil reservoirs. A numerical simulation of proppants transport at both hydraulic fracture (HF) and natural fracture (NF) intersection is performed to provide a better understanding of key factors which cause, or contribute to proppants transport in HF–NF intersection. Computational fluid dynamics (CFD) in association with discrete element method (DEM) is used to model the complex interactions between proppant particles, host fluid medium and fractured walls. The effect of non-spherical geometry of particles is considered in this model, using the multi-sphere method. All interaction forces between fluid flow and particles are considered in the computational model. Moreover, the interactions of particle–particle and particle–wall are taken into account via Hertz–Mindlin model. The results of the CFD-DEM simulations are compared to the experimental data. It is found that the CFD-DEM simulation is capable of predicting proppant transport and deposition quality at intersections which are in agreement with experimental data. The results indicate that the HF–NF intersection type, fluid velocity and NF aperture affect the quality of blockage occurrence, presenting a new index, called the blockage coefficient which indicates the severity of the blockage.