Electroanalytical and spectroscopic procedures for examination of interactions between double stranded DNA and intercalating drugs

A method is presented for the electroanalytical characterization of interactions of dsDNA with a drug, under conditions that both agents are dissolved in the phosphate buffer solution and both are electroactive. Normal pulse, square wave, differential pulse, and cyclic voltammetries were employed in the measurements of the drug and dsDNA oxidation signals at carbon electrodes. UV–Vis spectroscopy was used as a non-electrochemical method to support the electroanalytical data. An anticancer drug, C-1311 (5-diethylaminoethyl-amino-8-hydroxyimidazoacridinone), has been selected for the examination. Normal pulse voltammetry was particularly useful in showing that under the conditions employed neither dsDNA nor the drug were adsorbed at the electrode surface. Necessary conditions for the appearance of the well-defined dsDNA voltammetric signal (guanine peak) are: rigorous chemical and biological purity in the cell and appropriate purity of DNA. An analysis of the obtained results confirmed that there were two modes of interaction between C-1311 and dsDNA: by intercalation and electrostatically. In the presence of excess NaCl the electrostatic interactions deteriorate. The binding constants (K ₁ and K ₂, respectively) and the number (n) of nucleic base pairs (bp) and the number (m) of phosphate groups (pg) interacting with one molecule of drug have been determined. For strong interactions (intercalation) the values of the binding constant, K ₁, and the binding-site size, n, equal 3.7 × 10⁴ M⁻¹ and 2.1, respectively. For the weak electrostatic interactions the K ₂ and m parameters equal 0.28 × 10⁴ M⁻¹ and 4.7. The intercalation process is rather slow and its rate (the conditions of pseudo-first-order reaction) was estimated to equal 7 × 10⁻⁴ s⁻¹. The possibility of independent determination of both interacting agents was very useful in the study. Figure Intercalation of C-1311 into a dsDNA fragment     

Complexes of atmospheric alpha-dicarbonyls with water: FTIR matrix isolation and theoretical study

The complexes of glyoxal (Gly), methylglyoxal (MGly), and diacetyl (DAc) with water have been studied using Fourier transform infrared (FTIR) matrix isolation spectroscopy and MP2 calculations with 6-311++G(2d,2p) basis set. The analysis of the experimental spectra of the Gly(MGly,DAc)/H2O/Ar matrixes indicates formation of one Gly...H2O complex, three MGly...H2O complexes, and two DAc...H2O ones. All the complexes are stabilized by the O-H...O(C) hydrogen bond between the water molecule and carbonyl oxygen as evidenced by the strong perturbation of the O-H, C=O stretching vibrations. The blue shift of the CH stretching vibration in the Gly...H2O complex and in two MGly...H2O ones suggests that these complexes are additionally stabilized by the improper C-H...O(H2) hydrogen bonding. The theoretical calculations confirm the experimental findings. They evidence the stability of three hydrogen-bonded Gly...H2O and DAc...H2O complexes and six MGly...H2O ones stabilized by the O-H...O(C) hydrogen bond. The calculated vibrational frequencies and geometrical parameters indicate that one DAc..H2O complexes, two Gly...H2O, and three MGly...H2O ones are additionally stabilized by the improper hydrogen bonding between the C-H group and water oxygen. The comparison of the theoretical frequencies with the experimental ones allowed us to attribute the calculated structures to the complexes present in the matrixes.     

New chiral tin compounds containing the 2-(4-isopropyl-2-oxazolinyl)-5-phenyl ligand

A series of tri- and tetraorganotin compounds containing the optically active 2-(4-isopropyl-2-oxazolinyl)-5-phenyl ligand and tert-butyl, methyl and/or phenyl groups on the tin has been synthesized. All the novel compounds have been characterized, especially by means of the multinuclear NMR investigation, the results of which are discussed. The tin halides, as pairs of diastereoisomers in solution, crystallize in the form of one diastereoisomer. The single-crystal X-ray analysis of tin iodide 10a revealed pseudo-equatorial position of the tert-butyl group opposite to the isopropyl group. In the corresponding diastereomeric tin hydrides values of ¹J(¹H-^117/119Sn) differ significantly, suggesting a different pseudo-axial/equatorial position of the hydrogen atom.     

The influence of radio-frequency radiation on thermal stability of bovine serum albumin in aqueous solution

Protein unfolding events were studied by differential scanning calorimetry (DSC) for bovine serum albumin (BSA) aqueous solutions exposed to radio-frequency radiation. No immediate effect of this radiation on thermal unfolding of BSA was observed. The differences between irradiated and control samples have appeared during the storage of BSA solution. The irradiated samples changed faster than non-irradiated. Our results indicated that the age-related changes were stronger for 3.5 and 5 MHz than for 247 MHz frequency and dependent on energy power of radiation. Deconvolution of DSC traces allowed to study the effect of radio-frequency radiation on each component transition. This revised version was published online in July 2006 with corrections to the Cover Date.     

Polarographische Bestimmung von Diazepam in Leichenblut ohne vorherige Extraktion

Zusammenfassung Eine polarographische Methode zur direkten Bestimmung von Diazepam in Leichenblut ohne vorherige Extraktion wird beschrieben. Als Grundelektrolyt wird Britton-Robinson-Puffer (pH 2,8) und Methanol (41v/v) empfohlen. Die untere Bestimmungsgrenze liegt bei 20 g Diazepam/ml Blut.

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Polarographic determination of diazepam in cadaver blood without prior extraction

Summary A polarographic method is described for the direct determination of diazepam in cadaver blood without previous extraction. The fundamental electrolyte recommended is Britton-Robinson buffer solution (pH=2.8) and methanol (41v/v). The lower determination limit is situated at 20g diazepam/ml blood.

     

Effect of ethanol on the thermal stability of human serum albumin

The effect of ethanol on human serum albumin stability in aqueous solution was studied by use of differential scanning calorimetry. A deconvolution of DSC traces in 2-state model with ΔC _p=0 and ΔC _p≠0 was performed and analysed to obtain information on the interaction of ethanol with different parts of albumin molecule both fatty acid containing and fatty acid free. The differences in ethanol binding affinity for both kinds of albumin were found. At very low concentrations ethanol was observed to be a stabilizer of the folded state of albumin contrary to the higher concentration where its binding to the unfolded protein predominates.     

Collisionally activated dissociation of some pyridinium cations: Novel fragmentation pathways

Three novel collisionally induced dissociation pathways, additional to the usual formation of pyridine or pyridinium cation, are described for laser-desorbed N-substituted pyridinium cations. Particularly prevalent is the formation of an ion of m/z 94, corresponding to [PyCH₃]⁺. Doubly charged pyridiniums tend to lose H⁺, and one example of the apparent formation of the neutral radical C₅H₆N˙ is reported.     

Rifamycin antibiotics—new compounds and synthetic methods. Part 1: Study of the reaction of 3-formylrifamycin SV with primary alkylamines or ammonia

Within the study covering the search for new methods of synthesis of rifamycin antibiotics, the reactions of 3-formylrifamycin SV (2) with primary amines or ammonia were studied. In the reaction of 2 with methylamine, unstable 3-methyliminomethylrifamycin SV (8) was formed, which was further oxidised to stable 3-methyliminomethylrifamycin S (9). In the reaction of 2 with ammonia, N,15-didehydro-15-deoxo-pyrimido-(4,5-b)rifamycin SV (10), a new compound with a chromophore system enlarged by a pyrimidine ring, was obtained. The product of its reduction with sodium borohydride—(11)—was also isolated. The structures of the compounds and an explanation of the synthesis mechanism have been proposed on the basis of mass spectrometry results as well as (1D) and (2D) ¹H- and ¹³C NMR analysis. In vitro antituberculous activity of the new compounds have been investigated.