Improved B0 field map estimation for high field EPI

Echo planar imaging (EPI) is an ultrafast magnetic resonance imaging (MRI) technique that allows one to acquire a 2D image in about 100 ms. Unfortunately, the standard EPI images suffer from substantial geometric distortions, mainly originating from susceptibility differences in adjacent tissues. To reduce EPI distortions, correction methods based on a field map, which is a map of the off-resonance frequencies, have been developed. In this work, a nonlinear least squares estimator is used to optimize the estimation of the field map of the B₀ field. The model of the EPI and reference data includes parameters for the phase evolution, the complex magnitude, the relaxation of the MRI signal and the EPI-specific phase difference between odd and even echoes, and from these parameters, additional corrections might be computed. The reference data required to estimate the field map can be acquired with a modified EPI-sequence. The proposed method is tested on simulated as well as experimental data and proves to be significantly more robust against noise, compared to the previously suggested method.     

On the ν1/2 ν2 Resonance in the Complex of Carbon Dioxide with Dimethyl Ether

Infrared and Raman spectra of solutions in liquid argon and krypton containing dimethyl ether or its fully deuterated isotopomer and ¹²CO₂ or ¹³CO₂ are investigated. The spectra lead to new data on the ν₁/2 ν₂ resonances appearing in the complex of CO₂ with the ether. The experimental data, and their interpretation, is supported by MP2/6‐311++G(2d,2p) calculations of the cubic and quartic force constants and of the first and higher order dipole moment derivatives required for the modelling of the Fermi and Darling‐Dennison resonances observed.     

Accurate and unbiased estimation of power-law exponents from single-emitter blinking data

Single emitter blinking with a power-law distribution for the on and off times has been observed on a variety of systems including semiconductor nanocrystals, conjugated polymers, fluorescent proteins, and organic fluorophores. The origin of this behavior is still under debate. Reliable estimation of power exponents from experimental data is crucial in validating the various models under consideration. We derive a maximum likelihood estimator for power-law distributed data and analyze its accuracy as a function of data set size and power exponent both analytically and numerically. Results are compared to least-squares fitting of the double logarithmically transformed probability density. We demonstrate that least-squares fitting introduces a severe bias in the estimation result and that the maximum likelihood procedure is superior in retrieving the correct exponent and reducing the statistical error. For a data set as small as 50 data points, the error margins of the maximum likelihood estimator are already below 7%, giving the possibility to quantify blinking behavior when data set size is limited, e.g., due to photobleaching.     

Fluorogenic phospholipid substrate to detect lysophospholipase D/autotaxin activity

[reaction: see text] Lysophospholipase D (lysoPLD), also known as autotaxin (ATX), is an important source of the potent mitogen lysophosphatidic acid (LPA). Two fluorogenic substrate analogues for lysoPLD were synthesized in nine steps from (S)-PMB-glycerol. The substrates (FS-2 and FS-3) show significant increases in fluorescence when treated with recombinant ATX and have potential applications in screening for this emerging drug target.     

Conformational Stability from Variable-Temperature Infrared Spectra of Krypton Solutions, Ab Initio Calculations, and r o Structural Parameters of Chlorocyclopentane

The infrared spectra (3500–400 cm^–1) of krypton solutions of chlorocyclopentane, c-C₅H₉Cl, at variable temperatures (–101 to –150°C) have been recorded and the fundamental vibrations of the axial conformer and several of those for the equatorial form have been assigned. Utilizing two pairs of fundamentals for the two conformers in the krypton solution, an enthalpy difference of 145±15 cm^–1 (1.73±0.18 kJ-mol^–1) has been obtained with the axial conformer the more stable form. It is estimated that there is 67±2% of the axial conformer present at ambient temperature. Convincing spectroscopic evidence shows that a significant percentage of the chlorocyclopentane molecules are undergoing pseudorotation at ambient temperature. The conformational stabilities, harmonic force constants, fundamental frequencies, infrared intensities, and Raman activities have been obtained from MP2/6-31G(d) calculations with full electron correlation and these quantities have been compared to the experimental values when appropriate. The optimized geometries and conformational stabilities have also been obtained from ab initio MP2 calculations as well as by density functional theory (DFT) by the B3LYP method with several different basis sets. The adjusted r ₀ structural parameters have been obtained for both conformers by combining the ab initio data with the previously reported microwave rotational constants. These new values of the structural parameters for both conformers are compared to those previously reported from electron diffraction and microwave studies. These results are compared to the corresponding quantities of some similar molecules.     

Improper or classical hydrogen bonding? A comparative cryosolutions infrared study of the complexes of HCClF(2), HCCl(2)F,and HCCl(3) with dimethyl ether

Complexes of haloforms of the type HCCl(n)F(3-)(n) (n = 1-3) with dimethyl ether have been studied in liquid argon and liquid krypton, using infrared spectroscopy. For the haloform C[bond]H stretching mode, the complexation causes blue shifts of 10.6 and 4.8 cm(-1) for HCClF(2) and HCCl(2)F, respectively, while for HCCl(3) a red shift of 8.3 cm(-1) is observed. The ratio of the band areas of the haloform C[bond]H stretching in complex and monomer was determined to be 0.86(4) for HCClF(2), 33(3) for HCCl(2)F, and 56(3) for HCCl(3). These observations, combined with those for the HCF(3) complex with the same ether (J. Am. Chem. Soc. 2001, 123, 12290), have been analyzed using ab initio calculations at the MP2[double bond]FC/6-31G(d) level, and using some recent models for improper hydrogen bonding. Ab initio calculations on the haloforms embedded in a homogeneous electric field to model the influence of the ether suggest that the complexation shift of the haloform C[bond]H stretching is largely explained by the electric field effect induced by the electron donor in the proton donor. The model calculations also show that the electric field effect accounts for the observed intensity changes of the haloform C[bond]H stretches.     

Stimulus-sensitive hydrogels and their applications in chemical (micro)analysis

In this tutorial review the use of stimulus-sensitive hydrogels as sensors and actuators for (micro)analytical applications is discussed. The first part of the article is aimed at making the reader familiar with stimulus-sensitive hydrogels, their chemical composition and their chemo-physical behavior. The prior art in the field, that comprises a number of sensors ranging from metal ion-sensitive sensors to antigen-sensitive sensors and a few actuators, is also treated in this part. The second part of the article focusses on the use of stimulus-sensitive hydrogels for microsensors and microactuators as well as their application in micro total analysis systems. The benefits of stimulus-sensitive hydrogels, their miniaturisation and the use of 365 nm UV-photolithography as a fast economical manufacturing technique are discussed.     

A Direct Method for the Identification of the Permeability Field Based on Flux Assimilation by a Discrete Analog of Darcy's Law

Inverse models to determine the permeability are generally based on existing forward models for the pressure. The permeabilities are adapted in such a way that the calculated pressures match the specified pressures in a number of points. To assimilate a priori knowledge about the flux, we introduce the flux assimilation method, which is based on the vector potential–pressure formulation of Darcy's law. Thanks to an unconventional discretization technique – the edge-based face element method – not only the specified pressures, but also specified information about the flux density can easily be assimilated. A relatively simple, but insightful analytical example illustrates the potential of this method.