Brownian dynamics simulations for suspension of ellipsoids in liquid crystalline phase under simple shear flows

Brownian dynamics simulations of shear flows are carried out for various suspensions of ellipsoids interacting via the Gay-Berne potential. In this simulation all the systems of the suspension are in a liquid crystalline phase at rest. In a shear flow they exhibit various motions of the director depending on the shear rate: the continuous rotation, the intermittent rotation, the wagging-like oscillation, and the aligning. The director is almost always out of the vorticity plane when it rotates, that is the kayaking. The number density of the system and the inter-particle potential intensity significantly affect the shear rate dependence of orientation. In particular, the continuous rotation of director is maintained to higher shear rates for the system with a stronger potential. Furthermore, the rheological properties are examined. The shear-thinning in viscosity is observed, but the negative first normal difference is not obtained.     

Nick sealing by T4 DNA ligase on a modified DNA template: tethering a functional molecule on D-threoninol

Efficient DNA nick sealing catalyzed by T4 DNA ligase was carried out on a modified DNA template in which an intercalator such as azobenzene had been introduced. The intercalator was attached to a D-threoninol linker inserted into the DNA backbone. Although the structure of the template at the point of ligation was completely different from that of native DNA, two ODNs could be connected with yields higher than 90% in most cases. A systematic study of sequence dependence demonstrated that the ligation efficiency varied greatly with the base pairs adjacent to the azobenzene moiety. Interestingly, when the introduced azobenzene was photoisomerized to the cis form on subjection to UV light (320-380 nm), the rates of ligation were greatly accelerated for all sequences investigated. These unexpected ligations might provide a new approach for the introduction of functional molecules into long DNA strands in cases in which direct PCR cannot be used because of blockage of DNA synthesis by the introduced functional molecule. The biological significance of this unexpected enzymatic action is also discussed on the basis of kinetic analysis.     

Electrochemical-coupling layer-by-layer (ECC-LbL) assembly

Electrochemical-coupling layer-by-layer (ECC-LbL) assembly is introduced as a novel fabrication methodology for preparing layered thin films. This method allows us to covalently immobilize functional units (e.g., porphyrin, fullerene, and fluorene) into thin films having desired thicknesses and designable sequences for both homo- and heteroassemblies while ensuring efficient layer-to-layer electronic interactions. Films were prepared using a conventional electrochemical setup by a simple and inexpensive process from which various layering sequences can be obtained, and the photovoltaic functions of a prototype p/n heterojunction device were demonstrated.     

Reversible photoredox switching of porphyrin-bridged bis-2,6-di-tert-butylphenols

Porphyrin derivatives bearing 2,6-di-tert-butylphenol substituents at their 5,15-positions undergo reversible photoredox switching between porphyrin and porphodimethene states as revealed by UV-vis spectroscopy, fluorescence spectroscopy, and X-ray single-crystal analyses. Photoredox interconversion is accompanied by substantial variations in electronic absorption and fluorescence emission spectra and a change of conformation of the tetrapyrrole macrocycle from planar to roof-shaped. Oxidation proceeds only under photoillumination of a dianionic state prepared through deprotonation using fluoride anions. Conversely, photoreduction occurs in the presence of a sacrificial electron donor. Transient absorption spectroscopy and electron spin resonance spectroscopy were applied to investigate the processes in photochemical reaction, and radical intermediates were characterized. That is, photooxidation initially results in a phenol-substituent-centered radical, while the reduction process occurs via a delocalized radical state involving both the macrocycle and 5,15-substituents. Forward and reverse photochemical processes are governed by different chemical mechanisms, giving the important benefit that conversion reactions are completely isolated, leading to better separation of the end states. Furthermore, energy diagrams based on electrochemical analyses (cyclic voltammetry) were used to account for the processes occurring during the photochemical reactions. Our molecular design indicates a simple and versatile method for producing photoredox macrocyclic compounds, which should lead to a new class of advanced functional materials suitable for application in molecular devices and machines.     

The synthetic and biological studies of discorhabdins and related compounds

Various analogues of the marine alkaloids, discorhabdins, have been synthesized. The strategy contains spirocyclization with phenyliodine(III) bis(trifluoroacetate) (PIFA), oxidative fragmentation of the β-amino alcohols with the hypervalent iodine reagent C(6)F(5)I(OCOCF(3))(2), the detosylation and dehydrogenation reaction of the pyrroloiminoquinone unit in the presence of a catalytic amount of NaN(3) and the bridged ether synthesis with HBr-AcOH as the key reactions. All the synthesized compounds were evaluated by in vitro MTT assay for cytotoxic activity against the human colon cancer cell line HCT-116. Furthermore, the discorhabdin A oxa analogues were also evaluated against four kinds of tumor model cells, a human colon cancer cell line (WiDr), a human prostate cancer cell line (DU-145) and murine leukemia cell lines (P388 and L1210). For the identification of the target, discorhabdin A and the discorhabdin A oxa analogue were evaluated by an HCC panel assay. In the test, discorhabdins could have a novel mode of action with the tumor cells.     

Direct conversion of acetals to esters with high regioselectivity via O,P-acetals

A new direct conversion of O,O-acetals to esters via O,P-acetal intermediates was developed. The regioselective cleavage of unsymmetrical cyclic acetals occurred to give the more crowded esters as single isomers.     

A new method for aromatic difluoromethylation: copper-catalyzed cross-coupling and decarboxylation sequence from aryl iodides

A new methodology for aromatic difluoromethylation is described. Aryl iodides reacted with α-silyldifluoroacetates upon treatment with copper catalyst in DMSO or DME to give the corresponding aryldifluoroacetates in moderate to good yields. The subsequent hydrolysis of aryldifluoroacetates and KF-promoted decarboxylation afforded a variety of difluoromethyl aromatics.