Computational insight into the effect of C(19) substituents on [1,7]-hydrogen shift in previtamin D

 B3LYP calculations in conjunction with natural bond orbital population analysis have been performed for a previtamin D model and corresponding transition structures for the [1,7]-hydrogen migration. In addition the 19,19-difluoro, 19-methoxy and 19-fluoro substituted analogs were investigated. The calculated activation barriers decrease in the following order: CHF₂>CH₃>CH₂OCH₃ (24.8, 23.5 and 20.1 kcal/mol). This is in qualitative agreement with experiments. It has been suggested that a decrease of the barrier by a 19-methoxy substituent and its increase by a 19,19-difluoro substituent are phenomena of different origin. In the case of 19-methoxy substitution, the effect is due to the charge redistribution in the triene system and the decrease of the C(19)–H bond energy. The effect of two fluorine substituents at C-19 on the activation barrier is suggested to originate from the combination and balance of several factors: electrostatic repulsion between the negative fluorine atom and the π-electron cloud over the conjugated system, an increase of the HOMO–LUMO gap, and geminal difluoro substitution affecting C–F and C–C bond energies. Received: 17 May 2002 / Accepted: 11 September 2002 / Published online: 14 February 2003     

Bending of beams with bisymmetrical cross sections under non-uniformly distributed load: analytical and numerical-FEM studies

Archive of Applied Mechanics - The paper is devoted to simply supported beams subjected to non-uniformly distributed loads. Shapes of bisymmetrical cross sections of the beams are expressed by...     

Effect of Diamine Bridge on Reactivity of Tetradentate ONNO Nickel(II) Complexes

Two new square planar ONNO nickel(II) complexes C2_core and C3_core have been synthesized and characterized by single crystal X-ray diffraction, NMR spectroscopy, thermogravimetry, and DFT calculations. The experimental results revealed the effect of the length of diamine bridge in the ligand on the behavior of the studied complexes in the reaction with N-heterocyclic aromatic amines, while DFT calculations provided a basis for the rationalization of this observation. The complex with propylenediamine bridge ( C3_core ) readily reacts with pyridine and its derivatives to form high-spin (paramagnetic) complexes with octahedral geometry as characterized by X-ray diffraction; electron-donating substituents on the pyridine ring facilitate the coordination of axial ligands. In contrast, the complex with ethylenediamine bridge ( C2_core) does not undergo such a reaction because of the high deformation energy of the core required for the formation of C2_Py complex.     

The first structurally analysed nucleic acid building block containing the Reese protecting group: 2′‐O‐[1‐(2‐fluorophenyl)‐4‐methoxypiperidin‐4‐yl]‐β‐D‐(1′R,2′R,3′R,4′R)‐uridine

The title compound, C₂₁H₂₆FN₃O₇, is assembled by N—H...O and O—H...O hydrogen bonds into well‐separated two‐dimensional layers of about 15 Å thickness. The crescent conformation of the molecules is stabilized by weak intramolecular C—H...O and C—H...F hydrogen bonds. The uridine moiety adopts an anti conformation. The ribofuranose ring exists in an envelope conformation. All the endocyclic uracil bonds are shorter than normal single C—N and C—C bonds, and five of them have comparable lengths, which implies a considerable degree of delocalization of the electron density within this ring.     

Periodic mesoporous organosilicas with Im3m symmetry and large isocyanurate bridging groups

Adsorption and structural properties of periodic mesoporous organosilica with Im3m symmetry (SBA-16) and large heterocyclic bridging groups in cage-like mesopores are studied. The core of this bridging group is an isocyanurate ring integrated with three trimethoxysilyls through flexible propyl chains.     

Catalytic activities of hafnium,tantalum, and tungsten carbides in the high-temperature para/ortho conversion of hydrogen

Theoretical and Experimental Chemistry -     

Polymer-templated organosilicas with hexagonally ordered mesopores: the effect of organosilane addition at different synthesis stages

Two series of ordered mesoporous organosilica (OMO) SBA-15 materials with surface and bridging groups were fabricated by varying the organic precursor addition at different synthesis stages. The consequence of the delayed introduction of organic precursor on the structural and adsorption properties of the resulting OMOs was investigated. The OMOs studied were synthesized via co-condensation of tetraethyl orthosilicate (TEOS) and ureidopropyltrimethoxysilane (UPS) as well as TEOS and bis(triethoxysilylpropyl) disulfide (BTDS) in the presence of poly(ethylene oxide)-poly(propylene oxide)- poly(ethylene oxide) triblock copolymer Pluronic P123 (EO₂₀PO₇₀EO₂₀). The aforementioned OMOs were characterized by nitrogen adsorption-desorption isotherms at −196 °C and powder X-ray diffraction (XRD). Nitrogen adsorption isotherms were used to estimate the pore volume, mesopore diameter and the BET specific surface area, whereas the XRD data provided information about structural ordering and unit cell of the samples studied. Ryan Felix, undergraduate student from Oberlin College (Oberlin, OH, USA) participating in the NSF-REU program during Summer 2006.     

GRID formalism for the comparative molecular surface analysis: application to the CoMFA benchmark steroids, azo dyes, and HEPT derivatives

Shape analysis is a powerful tool in chemistry and drug design, and molecular surface defines shape in the molecular scale. In the current publication we presented a novel formalism for the comparative molecular surface analysis (s-CoMSA). The method enables both quantitative modeling of 3D-QSAR and finding possible pharmacophoric sites. The method provides very predictive models for the CBG activity of the benchmark steroid series, tinctorial properties of the heterocyclic azo dyes and anti-HIV activity of the HEPT series.