Synthesis, Characterization, and Antibacterial Activity of Complexes of (1S,2S)-N,N-1,2-Diphenylethylene- bis -(5-imino-1-phenyl-1,3-hexanedione)

 The synthesis and characterization of homobimetallic complexes of VO(IV), Cr(II), Co(II), Ni(II), and Cu(II) with the chiral Schiff base (1S,2S)-N,N-1,2-Diphenylethylene-bis-(5-imino-1-phenyl-1,3-hexa-nedione) is reported. The metal ions occupy both compartments of the ligand; water molecules fill the coordination spheres to provide an octahedral environment around the central atoms. The antibacterial activity of both mono- and bimetallic complexes against a number of Gram-positive as well as Gram-negative bacteria has been tested and is discussed.     

[Ni(NHC)2] as a Scaffold for Structurally Characterized trans [H−Ni−PR2] and trans [R2P−Ni−PR2] Complexes

The addition of PPh₂H, PPhMeH, PPhH₂, P(para-Tol)H₂, PMesH₂ and PH₃ to the two-coordinate Ni⁰ N-heterocyclic carbene species [Ni(NHC)₂] (NHC=IiPr₂, IMe₄, IEt₂Me₂) affords a series of mononuclear, terminal phosphido nickel complexes. Structural characterisation of nine of these compounds shows that they have unusual trans [H−Ni−PR₂] or novel trans [R₂P−Ni−PR₂] geometries. The bis-phosphido complexes are more accessible when smaller NHCs (IMe₄>IEt₂Me₂>IiPr₂) and phosphines are employed. P−P activation of the diphosphines R₂P−PR₂ (R₂=Ph₂, PhMe) provides an alternative route to some of the [Ni(NHC)₂(PR₂)₂] complexes. DFT calculations capture these trends with P−H bond activation proceeding from unconventional phosphine adducts in which the H substituent bridges the Ni−P bond. P−P bond activation from [Ni(NHC)₂(Ph₂P−PPh₂)] adducts proceeds with computed barriers below 10 kcal mol⁻¹. The ability of the [Ni(NHC)₂] moiety to afford isolable terminal phosphido products reflects the stability of the Ni−NHC bond that prevents ligand dissociation and onward reaction.     

Synthesis and reactions of hydroxyspiro[5.2]cyclooctenones based on the cyclization of the dianions of acetone and diethyl 2-oxopropylphosphonate with 1,1-diacylcyclopropanes

The cyclization of the dianions of diethyl 2-oxopropylphosphonate and of acetone with 1,1-diacylopropanes afforded hydroxyspiro[5.2]cyclooctenones which were transformed, by homo-Michael reactions with tetrabutylammonium halides, into various functionalized phenols or their dimers.     

Effect of variable viscosity on the peristaltic transport of a Newtonian fluid in an asymmetric channel

The effect of variable viscosity on the peristaltic flow of a Newtonian fluid in an asymmetric channel has been discussed. Asymmetry in the flow is induced due to travelling waves of different phase and amplitude which propagate along the channel walls. A long wavelength approximation is used in the flow analysis. Closed form analytic solutions for velocity components and longitudinal pressure gradient are obtained. The study also shows that, in addition to the effect of mean flow parameter, the wave amplitude also effect the peristaltic flow. This effect is noticeable in the pressure rise and frictional forces per wavelength through numerical integration.     

Ternary systems Sr-{Ni,Cu}-Si: Phase equilibria and crystal structure of ternary phases

Phase relations were established in the Sr-poor part of the ternary systems Sr-Ni-Si (900 °C) and Sr-Cu-Si (800 °C) by light optical microscopy, electron probe microanalysis and X-ray diffraction on as cast and annealed alloys. Two new ternary compounds SrNiSi₃ (BaNiSn₃-type) and SrNi_9−xSi_4+x (own-type) were found in the Sr-Ni-Si system along with previously reported Sr(Ni_xSi_1−x)₂ (AlB₂-type). The crystal structure of SrNi_9−xSi_4+x (own-type, x=2.7, a=0.78998(3), c=1.1337(2) nm; space group P4/nbm) was determined from X-ray single crystal counter to be a low symmetry derivative of the cubic, parent NaZn₁₃-type. At higher Si-content X-ray Rietveld refinements reveal the formation of a vacant site (□) corresponding to a formula SrNi_5.5Si_6.5□_1.0. Phase equilibria in the Sr-Cu-Si system are characterized by the compounds SrCu_2−xSi_2+x (ThCr₂Si₂-type), Sr(Cu_xSi_1−x)₂ (AlB₂-type), SrCu_9−xSi_4+x (0≤x≤1.0; CeNi_8.5Si_4.5-type) and SrCu_13−xSi_x (4≤x≤1.8; NaZn₁₃-type). The latter two structure types appear within a continuous solid solution. Neither a type-I nor a type-IX clathrate compound was encountered in the Sr-{Cu,Ni}-Si systems.Structural details are furthermore given for about 14 new ternary compounds from related alloy systems with Ba.     

Crystal structure and physical properties of quaternary clathrates Ba8ZnxGe46−x−ySiy, Ba8(Zn,Cu)xGe46−x and Ba8(Zn,Pd)xGe46−x

Three series of vacancy-free quaternary clathrates of type I, Ba₈Zn_xGe_46−x−ySi_y, Ba₈(Zn,Cu)_xGe_46−x, and Ba₈(Zn,Pd)_xGe_46−x, have been prepared by reactions of elemental ingots in vacuum sealed quartz at 800 °C. In all cases cubic primitive symmetry (space group Pm3?n, a∼1.1 nm) was confirmed for the clathrate phase by X-ray powder diffraction and X-ray single crystal analyses. The lattice parameters show a linear increase with increase in Ge for Ba₈Zn_xGe_46−x−ySi_y. M atoms (Zn, Pd, Cu) preferably occupy the 6d site in random mixtures. No defects were observed for the 6d site. Site preference of Ge and Si in Ba₈Zn_xGe_46−x−ySi_y has been elucidated from X-ray refinement: Ge atoms linearly substitute Si in the 24k site whilst a significant deviation from linearity is observed for occupation of the 16i site. A connectivity scheme for the phase equilibria in the “Ba₈Ge₄₆” corner at 800 °C has been derived and a three-dimensional isothermal section at 800 °C is presented for the Ba-Pd-Zn-Ge system. Studies of transport properties carried out for Ba₈{Cu,Pd,Zn}_xGe_46−x and Ba₈Zn_xSi_yGe_46−x−y evidenced predominantly electrons as charge carriers and the closeness of the systems to a metal-to-insulator transition, fine-tuned by substitution and mechanical processing of starting material Ba₈Ge₄₃. A promising figure of merit, ZT ∼0.45 at 750 K, has been derived for Ba₈Zn_7.4Ge_19.8Si_18.8, where pricey germanium is exchanged by reasonably cheap silicon.     

Directed evolution of cyclic peptides for inhibition of autophagy

In recent decades it has become increasingly clear that induction of autophagy plays an important role in the development of treatment resistance and dormancy in many cancer types. Unfortunately, chloroquine (CQ) and hydroxychloroquine (HCQ), two autophagy inhibitors in clinical trials, suffer from poor pharmacokinetics and high toxicity at therapeutic dosages. This has prompted intense interest in the development of targeted autophagy inhibitors to re-sensitize disease to treatment with minimal impact on normal tissue. We utilized Scanning Unnatural Protease Resistant (SUPR) mRNA display to develop macrocyclic peptides targeting the autophagy protein LC3. The resulting peptides bound LC3A and LC3B—two essential components of the autophagosome maturation machinery—with mid-nanomolar affinities and disrupted protein–protein interactions (PPIs) between LC3 and its binding partners in vitro. The most promising LC3-binding SUPR peptide accessed the cytosol at low micromolar concentrations as measured by chloroalkane penetration assay (CAPA) and inhibited starvation-mediated GFP-LC3 puncta formation in a concentration-dependent manner. LC3-binding SUPR peptides re-sensitized platinum-resistant ovarian cancer cells to cisplatin treatment and triggered accumulation of the adapter protein p62 suggesting decreased autophagic flux through successful disruption of LC3 PPIs in cell culture. In mouse models of metastatic ovarian cancer, treatment with LC3-binding SUPR peptides and carboplatin resulted in almost complete inhibition of tumor growth after four weeks of treatment. These results indicate that SUPR peptide mRNA display can be used to develop cell-penetrating macrocyclic peptides that target and disrupt the autophagic machinery in vitro and in vivo.

SUPR peptide mRNA display was used to evolve a cell-permeable, macrocyclic peptide for autophagy inhibition.     

Synthesis,Spectroscopy, Semi‐empirical and Biological Activities of Organotin(IV) Complexes with o‐Isopropyl Carbonodithioic Acid

New organotin(IV) complexes have been synthesized by treating potassium o‐isopropyl carbonodithioate with R₂SnCl₂/R₃SnCl in 1 : 2/1 : 1 M/L ratio. All complexes have been characterized by IR and NMR (¹H, ¹³C) spectroscopy. IR results shows that ligand acts as bidentate which is also confirmed by semi‐empirical study. NMR data reveals four coordinated geometry in solution. Computed positive heat of formation shows that complex 5 is thermodynamically unstable. UV/visible spectroscopy was used to assess the mode of interaction and binding of the complexes with DNA which shows that complex 5 exhibits higher binding constant as compared to complex 3 . In protein kinase inhibition assay, compound 3 was found most active, while other biological activities shows that triorganotin(IV) complexes are biologically more active as compared to diorganotin(IV) complexes.     

Characterization of Glycan Structures of Chondroitin Sulfate-Glycopeptides Facilitated by Sodium Ion-Pairing and Positive Mode LC-MS/MS

Purification and liquid chromatography-tandem mass spectrometry (LC-MS/MS) characterization of glycopeptides, originating from protease digests of glycoproteins, enables site-specific analysis of protein N- and O-glycosylations. We have described a protocol to enrich, hydrolyze by chondroitinase ABC, and characterize chondroitin sulfate-containing glycopeptides (CS-glycopeptides) using positive mode LC-MS/MS. The CS-glycopeptides, originating from the Bikunin proteoglycan of human urine samples, had ΔHexAGalNAcGlcAGalGalXyl-O-Ser hexasaccharide structure and were further substituted with 0-3 sulfate and 0-1 phosphate groups. However, it was not possible to exactly pinpoint sulfate attachment residues, for protonated precursors, due to extensive fragmentation of sulfate groups using high-energy collision induced dissociation (HCD). To circumvent the well-recognized sulfate instability, we now introduced Na⁺ ions to form sodiated precursors, which protected sulfate groups from decomposition and facilitated the assignment of sulfate modifications. Sulfate groups were pinpointed to both Gal residues and to the GalNAc of the hexasaccharide structure. The intensities of protonated and sodiated saccharide oxonium ions were very prominent in the HCD-MS2 spectra, which provided complementary structural analysis of sulfate substituents of CS-glycopeptides. We have demonstrated a considerable heterogeneity of the bikunin CS linkage region. The realization of these structural variants should be beneficial in studies aimed at investigating the importance of the CS linkage region with regards to the biosynthesis of CS and potential interactions to CS binding proteins. Also, the combined use of protonated and sodiated precursors for positive mode HCD fragmentation analysis will likely become useful for additional classes of sulfated glycopeptides.

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