A novel technique for detecting single nucleotide polymorphisms by analyzing consumed allele-specific primers

We present a simple and rapid polymerase chain reaction (PCR)-based technique, termed consumed allele-specific primer analysis (CASPA), as a new strategy for single nucleotide polymorphism (SNP) analysis. The method involves the use of labeled allele-specific primers, differing in length, with several noncomplementary nucleotides added in the 5'-terminal region. After PCR amplification, the amounts of the remaining primers not incorporated into the PCR products are determined. Thus, nucleotide substitutions are identified by measuring the consumption of primers. In this study, the CASPA method was successfully applied to ABO genotyping. In the present method, the allele-specific primer only anneals with the target polymorphic site on the DNA, so it is not necessary to analyze the PCR products. Therefore, this method is only little affected by modification of the PCR products. The CASPA method is expected to be a useful tool for typing of SNPs.     

Isolation of iso-grayanotoxin II from leaves of Leucothoe grayana Max. Its X-ray crystallographic analysis and acute toxicity in mice

The structure of iso-grayanotoxin II, a new diterpenoid from Leucothoe grayana MAX., has been determined as 3 beta,5 beta,6 beta,14 beta,16 alpha-pentahydroxygrayanotox-9(10)-ene by spectroscopic and X-ray crystallographic analysis. The lethal dosage level of iso-grayanotoxin II in mice was lower than that of grayanotoxin III.     

Solvothermal Synthesis, Crystal Structure, and Properties of the First Zinc Containing Thioantimonate(III) [Zn( tren)] 2Sb 4S 8·0.75 H 2O

Yellow crystals of the title compound were obtained under solvothermal conditions reacting elemental Zn, Sb, and S in a solution of tris(2-aminoethyl)amine (=tren) and water. The compound crystallises in the monoclinic space group P2₁/c with a=13.0247(7), b=22.308(2), c=12.1776(6) Å, and =105.352(6)°. In the structure of [Zn(tren)]₂Sb₄S₈·0.75 H₂O two [Zn(tren)]²⁺ cations are bound to the [Sb₄S₈]^4– anion via S atoms. The Zn²⁺ ions are in a trigonal bipyramidal environment of four N atoms of the tetradentate tren ligand and one S atom of the [Sb₄S₈]^4– anion. The anion is formed by SbS₃ and SbS₄ units which share common corners and edges. The interconnection mode yields three different non-planar Sb₂S₂ heterorings. The shortest intermolecular Sb–S distance amounts to about 3.7Å, and taking this long separation into account undulated chains running along [001] are formed with the water molecules residing in the pocket-like cavities. Upon heating the compound decomposes in one step starting at about 240°C. The final decomposition product was identified as ZnS and Sb₂S₃ by X-ray powder diffractometry. Additionally, spectroscopic data as well as synthetic procedures for [Zn(tren)]₂Sb₄S₈·0.75 H₂O are reported.     

Determination of the thiol redox state of organisms: new oxidative stress indicators

This study describes a new methodology by which the concentrations of non-protein (NP) thiols glutathione (GSH), cysteine (CSH), N-acetylcysteine (AcCSH), and protein (P) thiols (PSH), as well as the contribution of these components to symmetric and mixed disulfides (NPSSR, NPSSC, NPSSCAc, PSSR, PSSC, PSSCAc, PSSP) can reliably be measured. The methodology consists of a strict sequence of methods which are applied to every sample. Free thiols at any given state of the procedure are measured by Ellmans assay, the CSH fraction is measured by its unique response in the ninhydrin assay, AcCSH is selectively measured with ninhydrin after enzymatic deacylation, proteins are separated from non-protein thiols/disulfides by precipitation with trichloroacetic or perchloric acid, disulfides are reduced into free thiols with borohydride, mixed disulfides between a protein and a non-protein component are measured by extracting the non-protein thiol from the protein pellet after borohydride treatment, and protein thiols/disulfides are measured after resolubilization of the protein pellet.When this method was applied to animal and fungal tissue, new molecular indicators of the thiol redox state of living cells were identified. The findings of the present study clearly show that the new parameters are very sensitive indicators of redox state, while at the same time the traditional parameters GSH and GSSG often remain constant even upon dramatic changes in the overall redox state of biological tissue. Therefore, unbiased assessment of the redox state also requires explicit measurement of its most sensitive thiol indicators.Electronic Supplementary Material Supplementary material is available in the online version of this article at . A link in the frame on the left on that page takes you directly to the supplementary material.     

Crystal structures and Mössbauer spectroscopic studies of oxo-centered trinuclear chloroacetate complexes

The crystal structures of oxo-centered trineclear cobalt-iron chloroacetate complex [Co^IIFe ₂ ^III O(CH₂ClCO₂)₆(H₂O)₃]·3H₂O (1) was compared with that of previously reported trinuclear iron complex [Fe^IIFe ₂ ^III O(CH₂ClCO₂)₆(H₂O)₃]·3H₂O (2) which has an isomorphous structure to 1. Compound 1 crystallizes in space group P2₁/n with Z=4 in a unit cell of a=14.826 (4) Å, b=4.536 (8) Å, c=14.000 (4) Å, =100.32 (2)⁰ and V=2968 (11) ų. The structure was refined to R=0.75 and R_w=0.82. The coordination geometries of the three iron atoms are observed equivalent in 1 indicating a static disorder of the position among cobalt and iron atoms. Two distinct Fe^III doublets observed in Mössbauer spectra of 1 become an indistinguishable broad doublet by dehydration of crystal water. On the other hand, no significant line-broadening is observed after the dehydration in complex 2. The results indicate that the dehydration in 2 induces a local environmental change reordering of an electronic configuration around iron atoms, whereas the remaining disordering is reflected in Mössbauer spectrum after the dehydration in 1.     

Oxygenolysis of flavonoid compounds: DFT description of the mechanism for quercetin.

Flavonoids are naturally occurring phenol derivatives present in substantial amounts in a large variety of plants, fruits and vegetables daily eaten by humans. Most of these compounds exhibit several interesting biological activities, such as antiradical and antioxidant actions. Indeed, by complexation with specific enzymes, flavonoids are notably liable to metabolize molecular dioxygen. On the basis of experimental results describing oxygenolysis of the flavonoid quercetin, activated by the enzyme quercetin 2,3-dioxygenase (2,3-QD),ur attention has focused on the role of metal center in the activation of the substrate quercetin. Thus, in the present study, by means of DFT calculations at the B3LYP/ 6-31(+)G* level on model molecular systems, we describe different mechanisms for dioxygen metabolization by quercetin. Stationary points are described, and energetic and structural analyses along the reaction paths are reported. Our calculations show that the copper cation must act as an oxidant towards the substrate and that the reaction proceeds through a 1,3-cycloaddition.     

The economical parameter survey program for long-term transient temperature distribution and stress analysis around the sodium level of the liquid metal fast breeder reactor

The thermal stress around the sodium level of the LMFBR reactor vessel, caused by the axial temperature distribution during heat-up and cool-down transient conditions, is one of the most important problems for a reactor vessel designer, especially in a conceptual design stage. Key parameters relating to plant operating transient conditions and reactor vessel main configuration should be settled carefully, thermal stresses not being allowed to exceed design stress limits. In order to examine the sodium level thermal stress easily and economically, a simple computer program for parameter survey has been developed. This program uses a one-dimensional Fourier series solution in transient temperature distribution analysis, and an analytical stress solution based on shell theory in stress value estimation. This paper presents a simplified and economical calculation method for the axial temperature distribution and stress value in the LMFBR operating transient conditions, and analysis examples obtained with this computer program.

---

Zusammenfassung Der durch die axiale Temperaturverteilung während der Übergangsphase von Aufheizen und Abkühlen verursachte thermische Streß rund um den Natriumfüllstand des LMFBR-Reaktorkessels ist für den Reaktorkesselkonstrukteur, besonders im Entwurfstadiuni eines der wichtigsten Probleme. Die mit den transienten Operationsbedingungen der Anlage und der Gestaltung des Reaktorkessels in Beziehung stehenden Grundparameter müssen sorgfältig ermittelt werden, um zu verhindern, daß der thermische Streß die geplanten Streßgrenzen nicht überschreitet. Um den thermischen Streß um den Natriumfüllstand, leicht und ökonomisch zu bestimmen, wurde ein Komputerprogramm für die Parameterübersicht aufgestellt. In diesem Programm wird von einer eindimensionalen Fourrierreihe zur Analyse der transienten Temperaturverteilung und einer auf der Schalentheorie von Streßwertbestimmungen basierende analytische Lösung Gebrauch gemacht. Im vorliegenden Artikel werden eine vereinfachte und wirtschaftliche Berechnungsmethode für die axiale Temperaturverteilung und Streßwerte bei transienten Arbeitsbedingungen mitgeteilt und mit diesem Komputerprogramm ausgeführte Analysenbeispiele angegeben.

---

, - () , , , . , , , . , , - , . , , .

---

---

Paper presented at the World Conference on Thermal Analysis, Madeira (Portugal) 1986.