Engineered synapse model cell: genetic construction and chemical evaluation for reproducible high-throughput analysis

Bioassay models of neural functions must lend themselves to high-throughput analysis in neural drug discovery. However, smart analysis methods for these functions have not yet been fully established. Here, we describe the development of a synapse model for cell-based biosensing. The engineered synapse model cell expresses ionotropic glutamate receptor on its surface, like the neural postsynaptic membrane. The advantages of the model cell are the ease of handling and reproducibility as compared with the cultured neural cell, and it can be employed to evaluate receptor function through ion flux analysis. The agonist-induced sodium influx was monitored as an agonist concentration-dependent increase in the observed fluorescence signal. Furthermore, we found that our model cell enables the correction of uneven cellular signal levels using a reporter system. Our engineered synapse model cell can be employed as a powerful tool for the screening of lead substances in pharmaceutical high-throughput analysis.     

Determination of organic compounds from wood combustion aerosol nanoparticles by different gas chromatographic systems and by aerosol mass spectrometry

Organic compounds in atmospheric nanoparticles have an effect on human health and the climate. The determination of these particles is challenged by the difficulty of sampling, the complexity of sample composition, and the trace-level concentrations of the compounds. Meeting the challenge requires the development of sophisticated sampling systems for size-resolved particles and the optimization of sensitive, accurate and simple analytical techniques and methods. A new sampling system is proposed where particles are charged with a bipolar charger and size-segregated with a differential mobility analyzer. This system was successfully used to sample particles from wood pyrolysis with particle sizes 30–100 nm. Particles were analyzed by four techniques: comprehensive two-dimensional gas chromatography–time-of-flight mass spectrometry, gas chromatography–time-of-flight mass spectrometry, gas chromatography–quadrupole mass spectrometry, and aerosol mass spectrometry (aerosol MS). In the chromatographic techniques, particles were collected on a filter and analyzed off-line after sample preparation, whereas in the aerosol MS, particle analysis was performed directly from the particle source. Target compounds of the samples were polyaromatic hydrocarbons and n-alkanes. The analytical techniques were compared and their advantages and disadvantages were evaluated. The sampling system operated well and target compounds were identified in low concentrations.     

Transverse, tilting and cross-coupling stiffness of cylindrical rubber isolators in the audible frequency range—The wave-guide solution

Audio-frequency wave-guide models for antisymmetric dynamic stiffness of arbitrary long elastomer cylinders are presented. The locally non-mixed boundary conditions at the lateral and radial surfaces are simultaneously satisfied by using the modes corresponding to the dispersion relation for axial waves in cylinders satisfying the stress free boundary conditions at the curved radial boundaries, while the displacement conditions on the flat cylinder ends are satisfied by mode matching. The elastomer is modelled as nearly incompressible with deviatoric visco-elasticity based on a fractional derivative, standard linear solid embodying a Mittag-Leffler relaxation kernel, the main advantage being the minimum parameter number required to successfully model the material properties over a broad frequency band. The stiffness is found to depend strongly on frequency; displaying resonances and anti-resonances. The method is compared with and verified against finite element models. In addition, comparison to thin beam theories, i.e. Euler and Timoschenko theory and a simple shear model, is presented, illustrating the limitations of these models.     

Comparison of quartz and Teflon filters for simultaneous collection of size-separated ultrafine aerosol particles and gas-phase zero samples

In this research, the two most common filter media, quartz and Teflon, were tested to obtain information about the possible adsorption of gas-phase compounds onto filters during long sample collection of atmospheric aerosols. Particles of nanometer-size for off-line chemical characterization were collected using a recently introduced differential mobility analyzer for size separation. Samples were collected at an urban site (Helsinki, SMEARIII station) during spring 2010. Sampling time was 4 to 10 days for particles 50, 40, or 30 nm in diameter. Sample air flow was 4 L/min. The sampling setup was arranged so that two samples were obtained for each sampling period almost simultaneously: one containing particles and adsorbed gas-phase compounds and one containing adsorbed gas-phase compounds only. Filters were extracted and analyzed for the presence of selected carboxylic acids, polyols, nitrogen-containing compounds, and aldehydes. The results showed that, in quartz filter samples, gas-phase adsorption may be responsible for as much as 100% of some compound masses. Whether quartz or Teflon, simultaneous collection of gas-phase zero samples is essential during the whole sampling period. The dependence of the adsorption of gas-phase compounds on vapor pressure and the effect of adsorption on the deposited aerosol layer are discussed.     

Preparation of dimethoxyborane and analysis by Fourier transform infrared spectroscopy

Dimethoxyborane was prepared by the reaction of trimethoxyboroxine, sodium borohydride and trimethyl borate in diethylene glycol dimethyl ether solvent at 70°C under atmospheric pressure followed by distillation to increase the purity and analyzed in liquid phase by FT-IR. The concentration of dimethoxyborane was identified by hydrolysis with water, which yields boric acid, methanol and hydrogen, whereas the generated hydrogen was analyzed by the mass detector of a volumetric flow apparatus. The FT-IR absorbance peak area showed a linear dependence on dimethoxyborane concentration in the wavenumber range 873 to 950 cm⁻¹ for samples with dimethoxyborane concentrations 0 to 6.2 wt% in trimethyl borate. Data fitting using the least square method gave an R ² value of 97%.     

The kink of cellular automaton rule 18 performs a random walk

We give an exact characterization of the movement of a single kink in the elementary cellular automaton Rule 18. It is a random walk with independent increments as well as independent delay times. Its statistical parameters are computed to confirm the earlier simulation results by Grassberger.     

Quantitative sphingosine measurement as a surrogate for total ceramide concentration—preclinical and potential translational applications

Biomarkers are an increasingly important constituent of the drug development process, offering the potential of increased efficiency through reduced compound attrition and earlier proof of mechanism and/or efficacy. Assays developed for compound screening that can be directly translated for clinical trials are especially valuable, but their successful adoption requires a careful balance between assay performance and implementation costs. One such ‘fit‐for‐purpose’ biomarker assay, the indirect measurement of pharmacological modulation of sphingolipid biosynthesis and disposition, is presented here. Among spingolipids, numerous ceramide species are readily detectable in different lipoprotein fractions of mammalian plasma, but their parallel quantification can be prohibitively expensive and time consuming. Ceramides differ in their fatty acid moiety, which is readily removed by hydrolysis, yielding a common sphingosine derivative, the measurement of which serves as an indicator of total ceramide. When followed by liquid chromatography tandem mass spectrometry (LC/MS/MS) for detection, robust analyte quantification becomes relatively straightforward. The practical utility of a method developed to be fit for the purpose of rapidly and quantitatively measuring treatment‐induced variations in total ceramide from hamster plasma and individual lipoprotein fractions is described. With a linear calibration range from 0.003 to 33.4 μm sphingosine, precision and accuracy error in plasma‐based quality controls spiked with ceramides was less than 15%. The specificity of the assay for ceramides was also assessed. The simplicity of the method would allow for its potential translation to other preclinical species, as well as for clinical applications in later‐stage drug development. Copyright © 2009 John Wiley & Sons, Ltd.     

The dynamics of defect ensembles in one-dimensional cellular automata

We investigate the dynamics of ensembles of diffusive defects in one-dimensional deterministic cellular automata. The work builds on earlier results on individual random walks in cellular automata. Here we give a natural condition guaranteeing diffusive behavior also in the presence of other defects. Simple branching and birth mechanisms are introduced and prototype classes of cellular automata exhibiting weakly interacting walks capable of annihilation and coalescence are studied. Their equilibrium behavior is also characterized. The design principles of cellular automata with desired diffusive interaction properties become transparent from this analysis.