Pulsed fluorescence measurements of trapped molecular ions with zero background detection

Sensitive methods have been developed to measure laser-induced fluorescence from trapped ions by reducing the detection of background scattering to zero levels during the laser excitation pulse. The laser beam diameter has been reduced to approximately 150 microm to eliminate scattering on trap apertures and the resulting laser-ion interaction is limited to a volume of approximately 10(-5) cm which is approximately 0.03-0.15 of the total ion cloud volume depending on experimental conditions. The detection optics collected fluorescence only from within the solid angle defined by laser-ion interaction volume. Rhodamine 640 and Alexa Fluor 350 ions, commonly used as fluorescence resonance energy transfer (FRET) fluorophores, were generated in the gas phase by using electrospray ionization and injected into a radiofrequency Paul trap where they were stored and exposed to Nd:YAG laser pulses at 532 and 355 nm for times up to 10 m. Fluorescence emitted by these ions was investigated for several trap q(z) values and ion cloud temperatures. Analysis of photon statistics indicated an average of approximately 10 photons were incident on the PMT detector per 15 ns pulse for approximately 10(3) trapped ions in the interaction volume. Fluorescence measurements displayed a dependence on trapped ion number which were consistent with calculations of the space charge limited ion density. To investigate the quantitative capability of these fluorescence techniques, the laser-induced fragmentation of trapped Alexa Fluor 350 ions was measured and compared with a rate equation model of the dynamics. Decay of the fluorescence signal as well as the parent ion number compared closely with quantitative predictions of the photofragmentation model.     

Thermophysical properties of oil shale minerals

The thermal diffusivity values of eight minerals that are commonly associated with oil shales of the Green River formation have been measured by the laser flash technique. Data are presented in the temperature range 25–500°C for quartz, dolomite, calcite, plagioclase, analcite, pyrite, potassium feldspar and low albite. A comparison of the thermal conductivities of some of these minerals, calculated from experimentally measured thermal diffusivity and density, with the experimental values reported in the literature reveals good agreement. Trends in the variation of thermal diffusivity with temperature and anisotropic effects in thermophysical parameters are discussed from the point of view of grain boundary effects in these polycrystalline mineral aggregates.     

Acetylcholinesterase complexed with bivalent ligands related to huperzine a: experimental evidence for species-dependent protein-ligand complementarity

Acetylcholinesterase (AChE) inhibitors improve the cognitive abilities of Alzheimer patients. (-)-Huperzine A [(-)-HupA], an alkaloid isolated from the club moss, Huperzia serrata, is one such inhibitor, but the search for more potent and selective drugs continues. Recently, alkylene-linked dimers of 5-amino-5,6,7,8-tetrahydroquinolinone (hupyridone, 1a), a fragment of HupA, were shown to serve as more potent inhibitors of AChE than (-)-HupA and monomeric 1a. We soaked two such dimers, (S,S)-(-)-bis(10)-hupyridone [(S,S)-(-)-2a] and (S,S)-(-)-bis(12)-hupyridone [(S,S)-(-)-2b] containing, respectively, 10 and 12 methylenes in the spacer, into trigonal TcAChE crystals, and solved the X-ray structures of the resulting complexes using the difference Fourier technique, both to 2.15 A resolution. The structures revealed one HupA-like 1a unit bound to the "anionic" subsite of the active-site, near the bottom of the active-site gorge, adjacent to Trp84, as seen for the TcAChE/(-)-HupA complex, and the second 1a unit near Trp279 in the "peripheral" anionic site at the top of the gorge, both bivalent molecules thus spanning the active-site gorge. The results confirm that the increased affinity of the dimeric HupA analogues for AChE is conferred by binding to the two "anionic" sites of the enzyme. Inhibition data show that (-)-2a binds to TcAChE approximately 6-7- and > 170-fold more tightly than (-)-2b and (-)-HupA, respectively. In contrast, previous data for rat AChE show that (-)-2b binds approximately 3- and approximately 2-fold more tightly than (-)-2a and (-)-HupA, respectively. Structural comparison of TcAChE with rat AChE, as represented by the closely related mouse AChE structure (1maa.pdb), reveals a narrower gorge for rat AChE, a perpendicular alignment of the Tyr337 ring to the gorge axis, and its conformational rigidity, as a result of hydrogen bonding between its hydroxyl group and that of Tyr341, relative to TcAChE Phe330. These structural differences in the active-site gorge explain the switch in inhibitory potency of (-)-2a and 2b and the larger dimer/(-)-HupA potency ratios observed for TcAChE relative to rat AChE. The results offer new insights into factors affecting protein-ligand complementarity within the gorge and should assist the further development of improved AChE inhibitors.     

Photoelectron spectroscopy of isolated multiply negatively charged oligonucleotides

Ultraviolet photoelectron spectroscopy in an ion beam was used to investigate the electronic properties of isolated DNA oligonucleotides [dA(5)-4H](4-) and [dT(5)-4H](4-), carrying four excess negative charges. We find the fourth adiabatic electron affinity to be slightly negative for [dA(5)-4H](4-), while it is positive for [dT(5)-4H](4-). This implies a significant influence of the base composition on energetics, which is in turn relevant for analytic applications and also for charge transport properties.     

Design and evaluation of a Dean vortex-based micromixer

A mixer, based on the Dean vortex, is fabricated and tested in an on-chip format. When fluid is directed around a curve under pressure driven flow, the high velocity streams in the center of the channel experience a greater centripetal force and so are deflected outward. This creates a pair of counter-rotating vortices moving fluid toward the inner wall at the top and bottom of the channel and toward the outer wall in the center. For the geometries studied, the vortices were first seen at Reynolds numbers between 1 and 10 and became stronger as the flow velocity is increased. Vortex formation was monitored in channels with depth/width ratios of 0.5, 1.0, and 2.0. The lowest aspect ratio strongly suppressed vortex formation. Increasing the aspect ratio above 1 appeared to provide improved mixing. This design has the advantages of easy fabrication and low surface area.     

Structure and magnetic properties of tetraarylporphinatomagnesium(II) electron transfer salts of 2,3,5,6-tetrafluoro-7,7,8,8-tetracyanoquinodimethane,TCNQF4

The crystal structures of the 2,3,5,6-tetrafluoro-7,7,8,8-tetracyanoquinodimethane, TCNQF(4), electron transfer salts of meso-tetraphenylporphinatomagnesium(II), [MgTPP][TCNQF(4)].PhMe and [MgTPP][TCNQF(4)].3(1,2-C(6)H(4)Cl(2)), and meso-tetrakis(3,4,5-trimethoxyphenyl)porphinatomagnesium(II), [MgT(3,4,5-OMe)PP][TCNQF(4)].3(1,2-C(6)H(4)Cl(2)), provide the first structurally characterized examples of 1-D metal-radical chains involving [Mg(II)(porphyrin(*))](+). These salts possess [TCNQF(4)](*-) stabilized by trans-mu-coordination to Mg(II) and exhibit nu(CN) at 2199 and 2177, 2212 and 2187, and 2194 and 2172 cm(-1), respectively. The [TCNQF(4)](*-) species is planar and bridges two cations with MgN distances of 2.266(16), 2.221(2), and 2.276(3) A, respectively, which are shorter than the MnN 2.321(3) A distance observed for [MnT(3,4,5-OMe)PP][TCNQF(4)].3(1,2-C(6)H(4)Cl(2)). The room-temperature effective moments for [MgTPP][TCNQF(4)].xS (S = PhMe and 1,2-C(6)H(4)Cl(2)) and [MgTPP][C(4)(CN)(6)].PhMe are consistent with the calculated spin only value of 2.45 micro(B) with weak antiferromagnetic coupling (J(intra)/k(B) approximately -2.9 K; H = -2JSa.Sb) for these [TCNQF(4)](*-) salts and for this [C(4)(CN)(6)](*-) salt (J(intra)/k(B) approximately -0.8 K) on the basis of fits to several models. The coupling is significantly reduced with respect to that of the Mn analogues due to lack of spin on the metal site for [Mg(II)(por(*))](+). The antiferromagnetic coupling is enhanced for [MgT(3,4,5-OMe)PP][TCNQF(4)] with respect to [MgTPP][TCNQF(4)] as [TCNQF(4)](*-) gets closer to the [Mg(II)(por(*))](+) plane, which leads to greater interactions and coupling.     

Ultrasonic and Raman Scattering Spectroscopy of Zinc Thiocyanate Complexes in Water at 25<Superscript>∘</Superscript>C: Kinetics of Complex Formation Determined by Multivariate Analysis

Advances have been made recently in broadening the accessible ultrasonic absorption frequency range and improving the detectability of minor species present in solution using Raman spectroscopy. Development of chemometric techniques in these areas needs to keep pace with the improvement of these experimental methods. Refinements in the analysis of ultrasonic and Raman data based on multivariable least squares and factor analysis, respectively, are examined to investigate the kinetics of zinc thiocyanate complex formation in water. Analysis of ultrasonic absorption relaxation spectra verified that the observed process in aqueous Zn(SCN)₂ involves substitution of water from the first coordination shell of Zn²⁺. Use of a multivariable least-squares error surface is described that enhances the reliability of assigned frequencies of ultrasonic absorption maxima. Factor analysis of Raman scattering data provided direct evidence that at least four complex species, such as Zn(SCN)⁺ and Zn(SCN)₂, are simultaneously present in the aqueous zinc thiocyanate solutions.