An integrated structure- and pharmacophore-based MMP-12 virtual screening

MMP-12 belongs to a large family of proteases called matrix metalloproteinases (MMPs) that degrades elastin. The main pathologic role of MMP-12 overexpression was suggested to be associated with pathogenesis mechanism of inflammatory respiratory diseases and atherosclerosis. An integrated ligand- and structure-based virtual screening was employed in hope of finding inhibitors with new scaffolds and selectivity for MMP-12. Seven compounds among 18 experimentally tested compounds had a measurable effect on the inhibition of MMP-12 enzyme. Our results demonstrated the applicability of the developed pharmacophore model and selected crystal structure (PDB code: 3F17) to discover new MMP-12 inhibitors. The receptor structure was selected based on cross-docking results. Here, we report the discovery of new class of MMP-12 inhibitors that could be used for lead optimization. For the inhibition of MMP-12, the significance of its interactions with the catalytic residues Glu219 and Ala182 was emphasized through the inspection of the docking poses.     

Effect of boron and nitrogen co-doping on CNT's electrical properties: Density functional theory

In this work, we have theoretically studied the changes in electrical properties of three different geometrical structures of carbon nanotubes upon co-doping them with boron and nitrogen atoms. We applied different doping mechanisms to study band structure variations in the doped structures. Doping carbon nanotubes with different atoms will create new band levels in the band structure and as a consequence, a shift in the Fermi level occurs. Whereas, filling up the lowest conduction/ upper valence bands created an up/ downshift in the Fermi level. Moreover, dopants concentration and dopants position play a critical rule in defining the number of new band levels. These new band levels in the band gap region represented as new peaks appeared in the density of states. These new bands are solely attributed to co-doping carbon nanotubes with boron and nitrogen atoms.     

Oxide semiconductors for solar to chemical energy conversion: nanotechnology approach

The present work considers the application of oxide semiconductors in the conversion of solar energy into the chemical energy required for water purification (removal of microbial cells and toxic organic compounds from water) and the generation of solar hydrogen fuel by photoelectrochemical water splitting. The first part of this work considers the concept of solar energy conversion by oxide semiconductors and the key performance-related properties, including electronic structure, charge transport, flat band potential and surface properties, which are responsible to the reactivity and photoreactivity of oxides with water. The performance of oxide systems for solar energy conversion is briefly considered in terms of an electronic factor. The progress of research in the formation of systems with high performance is considered in terms of specific aspects of nanotechnology, leading to the formation of systems with high performance. The nanotechnology approach in the development of high-performance photocatalysts is considered in terms of the effect of surface energy associated with the formation of nanostructured system on the formation of surface structures that exhibit outstanding properties. The unresolved problems that should be tackled in better understanding of the effect of nanostructures on properties and performance of oxide semiconductors in solar energy conversion are discussed. This part is summarised by a list of unresolved problems of crucial importance in the formation of systems with enhanced performance. This work also formulates the questions that must be addressed in order to overcome the hurdles in the formation of oxide semiconductors with high performance in water purification and the generation of solar fuel. The research strategy in the development of oxide systems with high performance, including photocatalysts for solar water purification and photoelectrodes for photoelectrochemical water splitting, is considered. The considerations are focused on the systems based on titanium dioxide of different defect disorder as well as its solid solutions and composites.     

Effect of Satureja khuzestanica essential oil on oxidative stability of sunflower oil during accelerated storage

In this study, the application of various concentrations (0.02%, 0.04%, 0.06% and 0.08%) of Satureja khuzestanica essential oil (EO) was examined on the oxidative stability of sunflower oil and compared to butylated hydroxyanisole (BHA) during storage at 60°C. Gas chromatography (GC) and GC-mass spectrometry analyses of the oils revealed that carvacrol (87.7%) was the major component of EO. Peroxide value and anisidine value measurements in sunflower oil showed that all concentrations of EO had antioxidant effects in comparison to BHA. Oil samples supplemented with EO concentration of 0.08% were the most stable during storage (p?相似文献   

A new branch and bound algorithm for cell formation problem

Cell formation (CF) is the first and the most important problem in designing cellular manufacturing systems. Due to its non-polynomial nature, various heuristic and metaheuristic algorithms have been proposed to solve CF problem. Despite the popularity of heuristic algorithms, few studies have attempted to develop exact algorithms, such as branch and bound (B&B) algorithms, for this problem. We develop three types of branch and bound algorithms to deal with the cell formation problem. The first algorithm uses a binary branching scheme based on the definitions provided for the decision variables. Unlike the first algorithm, which relies on the mathematical model, the second one is designed based on the structure of the cell formation problem. The last algorithm has a similar structure to the second one, except that it has the ability to eliminate duplicated nodes in branching trees. The proposed branch and bound algorithms and a hybrid genetic algorithm are compared through some numerical examples. The results demonstrate the effectiveness of the modified problem-oriented branch and bound algorithm in solving relatively large size cell formation problems.     

Emission from a slab of resonant two-level atoms induced by a delta-pulse excitation

Using eigenmode analysis I calculate in the linear regime the emission characteristics from a slab of two-level resonant atoms excited by a delta-pulse propagating normal to the surface of the slab. I show that the qualitative features of the emitted spectra in the forward and backward directions to be different from each other; I also find the effects of the total linewidth of the resonance line and of the deviation in the spatial periodicity of the initial atomic polarization from k ₀, where k ₀ = ω₀/c and ω₀ is the two level resonant frequency, on the spectra. The dominant spatial mode of the system is identified as the key parameter for determining the forward emission spectral width.     

Entropy generation in flow field subjected to a porous block in a vertical channel

Entropy generation in the flow field subjected to a porous block situated in a vertical channel is examined. The effects of channel inlet port height (vertical height between channel inlet port and the block center), porosity, and block aspect ratio on the entropy generation rate due to fluid friction and heat transfer in the fluid are examined. The governing equations of flow, heat transfer, and entropy are solved numerically using a control volume approach. Air is used as the flowing fluid in the channel. A uniform heat flux is considered in the block and natural convection is accommodated in the analysis. It is found that entropy generation rate due to fluid friction increases with increasing inlet port height, while this increase becomes gradual for entropy generation rate due to heat transfer for the inlet port height exceeding 0.03 m. The porosity lowers entropy generation rate due to fluid friction and heat transfer. The effect of block aspect ratio on entropy generation rate is notable; in which case, entropy generation rate increases for the block aspect ratio of 1:2.     

TBHP/R4N+X– promoted hydroaroylation of dialkyl azodicarboxylates with methyl arenes,aldehydes, aryl methanols and arylmethyl chlorides

Efficient TBHP/R₄N⁺X^– promoted hydroaroylations of dialkyl azo-1,2-dicarboxylates with methyl arenes, aldehydes, aryl methanols and arylmethyl chlorides are described. These oxidation/oxygenation and hydroaroylation processes were carried out by tert-butyl hydroperoxide as terminal oxidant/oxygen source, and were catalyzed by tetrabutylammonium bromide and tricaprylmethylammonium chloride as the driving force. During this investigation, all these hydroaroylating sources were found to be highly efficient reagents without the need of any transition-metal.     

配合物(BenzMeIm)2[PtCl4]的合成与表征

通过离子液体氯化1-苄基-3-甲基咪唑（BenzMeIm-Cl）与PtCl₂的反应,合成了配合物（BenzMeIm）₂[PtCl₄],并用元素分析、红外光谱、紫外-可见光谱、¹H NMR、¹³C NMR和单晶X射线衍射对其进行了表征。单晶X射线分析表明,配合物结构属于P2₁/c空间群,晶胞参数和结构解析参数为：a=0.981 80（5）nm,b=0.861 47（3）nm,c=0.144 332（7）nm,β=92.480（2）°,V=121.96（1）nm³,R₁=0.014 4,wR₂=0.038 8。     

Theoretical conformational analysis of opiate peptides Leu-Enkephalin (H-Tyr-Gly-Gly-Phe-Leu-OH) and its two thioamide analogs (H-Tyr-Glyψ[CSNH]Gly-Phe-Leu-OH) and (H-Tyr-Gly-Glyψ[CSNH]Phe-Leu-OH)

In order to find informations on the native structure of the Leu-Enkephalin opiate peptide, the parent peptide and its two thioamide analogs (Thio-Gly2)Leu-Enkephalin and (Thio-Gly3)Leu-Enkephalin were studied by the theoretical method PEPSEA. This comparative conformational analysis showed that the active conformation is a β turn structure centered on Gly3 and Phe4. Moreover, this study showed also that the more active analog (Thio-Gly2)Leu-Enk has a lower tendency to adopt this structure. Consequently, its high activity can only be explained by its long lifetime due to its resistance to enzymatic hydrolysis, following the substitution of the amide linkage by the thioamide one. The weakly active analog (Thio-Gly3)Leu-Enk does not adopt this structure and prefers instead a β turn structure centered on Gly2 and Gly3. This study also confirmed the importance of the distances between the Tyr and Phe residues at positions 1 and 4, and that of the terminal Tyrosine N-H group which must be free of any intramolecular hydrogen bond in order to be available in the molecular recognition process.