Chemocavity: specific concavity in protein reserved for the binding of biologically functional small molecules

The idea that there should be a specific site on a protein for a particular functional small molecule is widespread. It is, however, usually not so easy to understand what characteristics of the site determine the binding ability of the functional small molecule. We have focused on the concurrence rate of the 20 standard amino acids at such binding sites. In order to correlate the concurrence rate and the specific binding site, we have analyzed high-quality X-ray structures of complexes between proteins and small molecules. A novel index characterizing the binding site based on the concurrency rate has been introduced. Using this index we have identified that there is a specific concavity designated as a chemocavity where a specific group of small molecules, i.e., canonical molecular group, is highly inclined to be bound. This study has demonstrated that a chemocavity is reserved for a specific canonical molecular group, and the prevalent idea has been confirmed.     

A novel route for the construction of Taxol ABC-ring framework: skeletal rearrangement approach to AB-ring and intramolecular aldol approach to C-ring

We report here on the construction of the ABC-ring framework of (±)-Taxol using an intramolecular aldol reaction as a key step. AB-ring compound 8 was converted to ketoaldehyde 25 as a precursor of an aldol reaction via introduction of oxygen-functionalities and a methoxycarbonyl group, which can be converted to a methyl group, in the proper positions of the B-ring. An aldol reaction of ketoaldehyde with LDA led to the formation of the desired product 27, which corresponds to the ABC-ring framework of (±)-Taxol.     

Determination of multiple thermal degradation mechanisms of poly(3-hydroxybutyrate)

The thermal degradation of poly(3-hydroxybutyrate) (PHB) was investigated by kinetic analyses in detail to clarify its complex degradation behavior, resulting in a finding of mixed mechanisms comprising at least a thermal random degradation with subsequent auto-accelerated transesterification, and a kinetically favored chain reaction from crotonate chain ends. The thermal degradation behavior of PHB varied with changes in time and/or temperature. From the kinetic analysis of changes in molecular weight, it was found that a non-auto-catalytic random degradation proceeding in the initial period was followed by an auto-accelerated reaction in the middle period. From the kinetic analysis of weight loss behavior, it is proposed that there are some kinetically favored scissions occurring at the chain ends, where the degradation proceeded by a 0th-order weight loss process in the middle stage. The observed 0th-order weight loss process was assumed to be an unzipping reaction occurring at ester groups neighboring the crotonate end groups.     

Controlled growth for synthesizing a compact mordenite membrane

Controlling the growth of zeolite crystals on a porous alumina support is essential for preparing a compact zeolite membarne. First, mordenite seed crystals applied on a nonporous -alumina disk were grown and morphological change of mordenite crystals were observed in the course of growth. Then, mordenite membranes were synthesized on a porous -alumina tube under the same conditions employed in the study using the alumina disks. We found that seed crystal growth was widely controllable by changing water content in reaction solution, which resulted in better control of the morphology of mordenite crystals for synthesizing a thin compact mordenite membrane. Separation properties for mordenite membranes were studied in water–hydrogen binary system at 473 K with 10 kPa of water partial pressure, where no capillary condensation was expected in non-zeolitic pores. Separation factor for a mordenite membrane with a few defects was poor; however, a defect-free mordenite membrane prepared under a suitable condition highly separated steam from hydrogen.     

Size, position and direction control on GaAs and InAs nanowhisker growth

The self-organized, position-controlled and parallel growth of GaAs and InAs nanowhiskers is successfully demonstrated by using a metal–organic chemical vapour deposition method. The growth takes place preferentially along the 111 As direction with the aid of the catalytic effect of Au nanodroplets, and not along 111 Ga or In directions. The diameter and length of the whisker can be controlled artificially down to 10 nm and to over 1 μm, respectively. Doping and composition control of p- or n-type such as GaAs–InAs heterostructure formation are possible along the length direction of the whisker by changing the source gases. In order to control the growth position of the whisker, positioning of a Au nanodroplet is essential and realized by a lithographic method. By choosing the [111]B direction to the substrate surface and normal to the patterned side edges, and by positioning the Au nanodroplet on the side wall, the positioned planar nanowhisker growth and bridging are successfully demonstrated. The growth mechanism of the nanowhiskers is revealed by the scanning and transmission electron microscope observations. Nanometer-size Au-alloy droplets play an important role in the growth of the whiskers. The whisker growth process is governed by the vapor–liquid–solid growth mechanism.     

High Power, Frequency Tunable, Submillimeter Wave ESR Device Using a Gyrotron as a Radiation Source

ESR device using a submillimeter wave gyrotron as a radiation source and a pulse magnet for high field up to 30 T has been constructed. Our gyrotrons (Gyrotron FU series) were developed as millimeter and submillimeter wave radiation sources and have attractive advantages for ESR spectroscopy, for example, high power and frequency tunability over broad range. The ESR device has been successfully applied to three cases of ESR measurements. In the first case, the temperature dependence of ESR was measured for a typical antiferromagnetic material MnO at the frequency of 301 GHz. In the second case, the dependence of the fine structure constant of the ruby on the magnetic field intensity was measured in the millimeter to submillimeter wave region. In these two cases, the gyrotron was operated by complete cw mode. In the final case, a pulse technique was applied to the ESR, the gyrotron was operated in pulse mode and the pulsed magnetic field was generated in the synchronized phase with the gyrotron operation.     

Dependent Choices and Anti‐Foundation

In Zermelo‐Fraenkel set theory without the Axiom of Foundation we study the schema version of the principle of dependent choices in connection with Aczel's antifoundation axiom (a part of it), Boffa's anti‐foundation axiom, and axiom of collection.     

Image formation by dyeing of copolymers bearing photogenerated acid and base groups with dye bath containing acid and basic dyes

Copolymers bearing photoacid generating groups and/or photobase generating groups were dyed after UV irradiation with a dye bath containing both an acid dye and a basic dye. Acetophenone O‐acryloyloxime (AAPO) was used as a monomer bearing acyloxyimino (AOI) group that generates a primary amino group upon irradiation, which is followed by hydrolysis. Phenacylsulfonylstyrene (PSSt) and 1,2,3,4‐tetrahydronaphthylideneamino p‐styrenesulfonate (NISS) were chosen as monomers having β‐keto sulfone (β‐KS) and iminosulfonate (IS) groups, respectively, which yielded acid groups when irradiated. Copolymers of AAPO and methyl methacrylate (MMA) were dyed with only the acid dye, and those of PSSt or NISS were dyed with only the basic dye after irradiation. AAPO‐PSSt‐MMA films became dyeable with the acid dye when irradiated for a short time and with the basic dye with further irradiation. However, AAPO‐NISS‐MMA copolymers showed the reverse dyeing behavior. IR spectra revealed that AOI groups were photochemically decomposed prior to the β‐KS groups for AAPO‐PSSt‐MMA, and AOI and IS groups decomposed simultaneously for AAPO‐NISS‐MMA. These results suggested the possibility of adsorption of different ionic dyes on the films by a change of irradiation time; in fact, color patterns could be obtained in a single staining process using the dye bath. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 3043–3051, 2000