A Biokinetic Model to Describe Consequences of Inhibition/Stimulation in DNA-Proofreading and -Repair,Part 2. Calibration of the Model

Summary.  A biokinetic model has been developed to describe the mathematical consequences of inhibition, respectively stimulation of proofreading. According to data reported in the literature, a first approximative calibration of the model has been carried out in an attempt to make it both: practically applicable and comparable with experimental data and clinical facts. The model is open for further improvements and adjustable according to results of further researches via the parameters chosen. In a first test of the model it is shown that it does well reflect the results described in the literature upon proof-reading-inhibition and its consequences, i.e., the reduction of replication-fidelity (→ exponential increase of malignant cells with time). As a further result it is shown that the model also does well describe in its kinetic approach opposite effects as, e.g., a reduction of wrong genetic information by classical cancer-therapies like chemotherapy and surgergy. The system is orientated towards known biochemical relations and chemical similarities together with a discussion of the potential chance which offer special combinations of chemically identifyable substances (like nucleotides’ precursors or effector-molecules contained in low-molecular-human-placenta-extracts as an alternative to umbilical cords’-blood/cells) as stimulators of the enzymatic proof-reading- and -repair-machinery. E-mail: Haschke.H@isovolta.com Received January 20, 2002; accepted (revised) June 26, 2002     

Concerning the Thermal Diastereomerization of the Green Fluorescent Protein Chromophore

Summary. Two model compounds for the green fluorescent protein chromophore were prepared. One of them incorporates the natural 4-hydroxybenzylidene group of the natural tyrosin derived chromophore, the other one bears a methyl group instead of the hydroxy group. Whereas the photochemically prepared (E)-diastereomer of the first compound very effectively reverted thermally (room temperature) to the thermodynamically stable (Z)-diastereomer, the (E)-diastereomer of the second derivative proved to be stable even at elevated temperatures for more than a day. This finding can be rationalized by constructing the appropriate resonance structures showing that only in the first case an effective delocalization enables partial single bond character of the benzylidene double bond. From the standpoint of chemical etiology, only Nature’s choice of the tyrosin derived chromophore of the green fluorescent protein provides an efficient radiationless thermal relaxation channel for the unwanted photo-diastereomerization product formed after excitation besides the dominating fluorescence channel of its chromophore.     

Carbene ligands as anthracyclinone-synthons-ii : Chromium mediated cycloaddition of alkynes, carbenes and carbon monoxide: application to ring b synthesis in anthracyclinones

The cycloaddition of Cr-co-ordinated alkyne, carbene and carbonyl ligands provides a variable route to the anthracyclinone skeleton. The key step of a formal total synthesis of4-demethoxydaunomycinone (1) is based on the reaction of carbonyl-carbene complex 15—used as a CD ring synthon—and alkyne 9 leading to the formation of ring B.     

Stoffwechselprodukte von Mikroorganismen. 177. Mitteilung. Avilamycin C

From cultures of the Avilamycin (Avilamycin A) producing organism, Streptomyces viridochromogenes, strain ETH 23575, a second antibiotic, Avilamycin C, C₆₁H₉₀Cl₂O₃₂ could be isolated in crystalline form. Both Avilamycins belong to the group of the Orthosomycins. By IR., ¹H- and ¹³C-NMR. spectroscopy and by transformation to a common derivative it could be proven that Avilamycin A is a methyl ketone, Avilamycin C the corresponding methyl carbinol.     

Bestimmung von kleinen Cadmium-Gehalten in Uranoxid durch Neutronenaktivierungsanalyse

Zusammenfassung Cadmiumspuren (10ppb-5ppm) in Uranoxid wurden durch Neutronenaktivierungsanalyse bestimmt. Einer Vortrennung des Cadmiums vom Uran durch Anionenaustausch mit Dowex 1 folgte die Bestrahlung auf dem Austauscherharz im FR 2. Die erzeugten Cadmium-Aktivitäten konnten durch einen kurzen chemischen Trennungsgang nach der Bestrahlung radiochemisch rein erhalten werden. Nach Korrektur der chemischen Ausbeuten verhielten sich die Aktivitäten proportional den eingesetzten Cadmiummengen.

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Determination of small amounts of cadmium in uranium oxide by neutron-activation analysis

A pre-separation of cadmium from uranium by anion-exchange on Dowex-1 was followed by irradiation on the exchange resin in the FR-2. The cadmium activities produced could be obtained radiochemically pure by a short chemical separation procedure after irradiation. After correction of the chemical yields the activities were proportional to the original cadmium content. 10 ppb-5 ppm of Cd could be determined.

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Herrn Dr. A. v. Baeckmann danke ich für wertvolle Hinweise, Frau M. Friedrich für ihre tatkräftige Mithilfe bei der Durchführung dieser Arbeit.     

Dynamic light-scattering analysis of the electrostatic interaction of hexahistidine-tagged cytochrome P450 enzyme with semiconductor quantum dots.

Currently, there is great interest in the development of methods suitable for determining the stoichiometry of biomolecules attached to nanoparticles. We describe the use of the dynamic light-scattering technique (DLS) to determine the stoichiometry of the protein cytochrome P450(BSbeta) attached to CdS and CdSe quantum dots (QDs). The enzyme-conjugated QDs have different diffusion characteristics compared to the QD and enzyme precursors, expressed in their size, scattering intensity as well as zeta-potential values. The significant enhancement of the scattering intensity of QDs observed upon conjugation with the P450(BSbeta) due to the refractive-index increment and the systematic variation in zeta potential resulting from charge neutralization of the anionic QDs by the cationic histidine-tagged P450(BSbeta) have been used for stoichiometry determination.     

Capto-dative Substituent Effects in Syntheses with Radicals and Radicophiles [New synthetic methods (32)]

The 100 yers old Wurster's salts have long been recognized as compounds with redical cations. Their unusual stabilization derives partly form capto-dative (cd) substitution. This principle is now discussed as one factor of radical stabilization and it is applied to simple methine derivatives. cd-Substitution has synthetically useful applications: cd-substituents on a carbon atom allow its selective dehydrodimerization. Olefines with geminal and thus cross-conjugated cd-substituents are “radicophilic” and permit twofold carbon radical addition. cd-Substituted olefines are useful antioxidants, polymerization inhibitors and are promising agents in the control of biological radical reactions. Generally, many reactions of cd-substituted molecules appear to involve radicals.     

Beiträge zur Chemie der Pyrrolpigmente, 20. Mitt.: Untersuchungen über das Deprotonierungsgleichgewicht und die Bildung von Metallkomplexen von Gallenpigment-Partialstrukturen

By spectrophotometric measurements in the systemDMSO/H₂O/Me ₄NOH pK _a-values for several model compounds representing bile pigment partial structures were established. The acidic protons of pyrrole and lactame type nitrogen atoms are removed by bases governed by the electronic properties of the substituents on these ring systems. The pK _a-values for both types lie in the same region. In the pyrromethenones the lower one corresponds to the lactame type NH as was deduced by comparison with specifically methylated derivatives.The complexation of these ligands is determined by the possibility of removing an acidic proton and achieving a chelate structure by means of an adjacent pyrrolinone type nitrogen atom. Complexes are favoured in the series pyrromethenes > lactim ethers > pyrromethenones. With the latter there are two possibilities: one observed with BF₂-chelation where the lactime form becomes stabilized, the other one with zink where both acidic centers are involved in the bonding.

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19. Mitt.:H. Falk, A. Leodolter undG. Schade, Mh. Chem.109, 183 (1978).     

Polysulfonylamine. CLX [1] Kristallstrukturen von Metall‐di(methansulfonyl)amiden. 10 [2] Die dreidimensionalen Koordinationspolymere M[(CH3SO2)2N] mit M = Kalium,Rubidium, Caesium (isotype Strukturen für M = K,Rb)

Polysulfonylamines. CLX. Crystal Structures of Metal Di(methanesulfonyl)amides. 10. The Three‐Dimensional Coordination Polymers M[(CH₃SO₂)₂N], where M is Potassium, Rubidium, Cesium (Isotypic Structures for M = K, Rb) Low‐temperature X‐ray crystal structures are reported for KA (monoclinic, space group P2₁/c, Z′ = 1), RbA (isotypic and isostructural with KA), and CsA (monoclinic, P2₁/n, Z′ = 1), where A^— denotes the anion obtained by deprotonation of the strong nitrogen acid (MeSO₂)₂NH. In KA and RbA, the anion is distorted into a rare C₁ conformation, whereas the standard C₂ conformation is retained in the cesium complex. The structures consist of three‐dimensional coordination networks, in which each cation adopts an irregular (O₆N)‐heptacoordination by forming close contacts to one (O, N)‐chelating, one (O, O)‐chelating and three κ¹O‐bonding ligands; however, the coordination number for Cs⁺ is effectively increased to 8 by a very short Cs···Cs contact distance of 422.5 pm. The crystal packings of the isotypic compounds KA and RbA display lamellar layer substructures that involve six independent ligand‐metal bonds and comprise an internal cation lamella and peripheral regions built up from anion monolayers; the 3D framework is completed by one independent M—O bond cross‐linking the layer substructures. In contrast, CsA features anion monolayers that intercalate planar zigzag chains of cations (Cs···Cs alternatingly 422.5 and 487.5 pm, Cs···Cs···Cs 135.7°), whereby each chain is surrounded and coordinated by four anion stacks and each anion stack connects two cation chains. All structures exhibit close C—H···A interanion contacts consistent with weak hydrogen bonding.     

Synthesen mit Nitrilen, 21. Mitt.: Anomalien bei der Reaktion von Dicyanolefinen mit Hydrazin

Zusammenfassung Es wird gezeigt, daß bei der Umsetzung von 9-Dicyanmethylen-9,10-dihydro-10-phenanthrenon mit asymm. Dimethylhydrazin dasselbe Hydrazino-(2-oxo-1,2-dihydro-phenanthryliden)-essigsäuredinitril entsteht, wie bei der Umsetzung von unsubstit. Hydrazin. Ein Mechanismus dieser Reaktion, bei welcher es zu einer Ablösung von zwei Methylgruppen kommt, wird an Hand der gaschromatographisch nachgewiesenen Folgeprodukte diskutiert.

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Hydrazino-(2-oxo-1,2-dihydrophenanthrylidene)-acetodinitrile was formed in the reaction of 9-dicyanomethylene-9,10-dihydro-10-phenanthren-one with asymmetric dimethylhydrazine as well as in the reaction with unsubstituted hydrazine. The mechanism of this reaction involving the removal of two methyl groups is discussed on the basis of secondary reaction products detected byGLC.