Deriving some quantum optical identities using the general ordering theorem

Using the newly introduced general ordering theorem by Shhandeh and Bazrafkan,we derive and generalize some quantum optical identities and give their applications.     

Local order in the Ni-Ta system

Short-range order in the Ni -Ta system is studied both experimentally (by diffuse scattering of x rays) and theoretically (by the pseudopotential method). The existence of local order is found in the alloy Ni-7 at. % Ta. The short-range order parameter calculated by the pseudopotential method, using Animalu form factors, coincided in sign with that observed experimentally.Translated from Izvestiya Vysshikh Uchebnykh Zavedenii, Fizika, No. 12, pp. 21–25, December, 1976.In conclusion the authors thank Prof. A. A. Katsnel'son for valuable advice and discussions of the results.     

Thermal equilibrium of high- and low-spin forms of cytochrome P450 BM-3: repositioning of the substrate?

We demonstrate that cytochrome P450 BM-3 in complex with N-palmitoylglycine undergoes a spin state change between room temperature, where optimal activity is seen, and low temperatures, where X-ray diffraction characterization has been carried out. On the basis of NMR measurements of the full-length protein, this spin state change is likely to be accompanied by a general structural rearrangement in the enzyme pocket. The substrate remains bound at all temperatures. We propose that the substrate may "slide" from a position directly atop the heme (thus displacing the ligating water) to the more distant position (thus restoring the ligating water) as the temperature is lowered. This proposal is evaluated on the basis of computational modeling of the protein-ligand complex, using a novel induced fit methodology. We thereby generate a structure with the ligand in close contact with the heme, similar in energy to the experimental structure. With this combination of theory and experiment we provide a specific proposal of how ligands may be positioned for chemistry for this enzyme.     

Cavity ring-down spectroscopy and theoretical calculations of the S1(1B3u)<--S0(1Ag) transition of jet-cooled perylene

As part of our long-term program to test the diffuse interstellar band-polycyclic aromatic hydrocarbon hypothesis, we have investigated the S(1)<--S(0) electronic transition of neutral perylene (C(20)H(12)) in a combined experimental and theoretical study. Jet-cooled perylene was prepared with a pulsed discharge slit nozzle and detected by cavity ring-down spectroscopy. A number of vibronic features were observed in the 24 000-24 900 cm(-1) spectral range. Density functional and ab initio calculations were performed to determine the geometries, harmonic vibrational frequencies, and normal coordinates of both the S(0) and S(1) electronic states. A rotational temperature of 52+/-5 K was derived from a rotational contour analysis of the vibronic band associated with the 0-0 transition. A Franck-Condon treatment was carried out to calculate the vibronic spectrum of the S(1)<--S(0) transition. A good agreement was found between the calculated and the experimental spectra. A vibrational assignment is proposed and six normal modes are identified. The contribution of neutral compact polycyclic aromatic hydrocarbons to the diffuse interstellar bands is briefly discussed.     

DNA REPAIR IN V-79 CELLS TREATED WITH COMBINATIONS OF PHYSICAL AND CHEMICAL CARCINOGENS*

Excision repair of DNA damage was measured by the photolysis of bromodeoxyuridine incorporated into parental DNA during repair in Chinese hamster V-79 cells treated with 254 nm of ultraviolet radiation (UV), 7,12-dimethylbenz[a]anthracene 5,6-oxide (DMBA-epoxide), N-acetoxy-2-acetylaminofluorene (AAAF), 4-nitroquinoline 1-oxide (4NQO), 2-methoxy-6-chloro-9-[3(ethyl-2-chloroethyl)-aminopropylamino]acridine dihydrochloride (ICR-170), X-rays, ethylmethanesulfonate (EMS), methyl methanesulfonate (MMS) and combinations of these agents. Compared to normal human cells V-79 were defective in repair of UV lesions and the lesions induced by the UV-mimetic chemicals. The extent of the defects varied from 10 to 50% and was similar to those in Xeroderma pigmentosum group C cells (XP C). V-79 cells repaired X-ray damage and damage from the alkylating agents EMS and MMS to the same extent as human cells. Repair was additive after a combination of UV plus MMS indicating, as expected, that there are different rate-limiting steps for removal of the damages from these agents. Repair was less than additive in cells treated with UV plus ICR-170, AAAF plus ICR-170, AAAF plus 4NQO, and 4NQO plus ICR-170 and approximately equal to that observed for the higher of the two agents separately, indicating that there may be similar rate-limiting steps for removal of lesions. Although the results on repair after combinations of UV plus 4NQO, UV plus DMBA-epoxide or X-rays plus MMS were difficult to interpret, there was not any inhibition of repair in these combinations.