Water PMF for predicting the properties of water molecules in protein binding site

Water is an important component in living systems and deserves better understanding in chemistry and biology. However, due to the difficulty of investigating the water functions in protein structures, it is usually ignored in computational modeling, especially in the field of computer‐aided drug design. Here, using the potential of mean forces (PMFs) approach, we constructed a water PMF (wPMF) based on 3946 non‐redundant high resolution crystal structures. The extracted wPMF potential was first used to investigate the structure pattern of water and analyze the residue hydrophilicity. Then, the relationship between wPMF score and the B factor value of crystal waters was studied. It was found that wPMF agrees well with some previously reported experimental observations. In addition, the wPMF score was also tested in parallel with 3D‐RISM to measure the ability of retrieving experimentally observed waters, and showed comparable performance but with much less computational cost. In the end, we proposed a grid‐based clustering scheme together with a distance weighted wPMF score to further extend wPMF to predict the potential hydration sites of protein structure. From the test, this approach can predict the hydration site at the accuracy about 80% when the calculated score lower than ?4.0. It also allows the assessment of whether or not a given water molecule should be targeted for displacement in ligand design. Overall, the wPMF presented here provides an optional solution to many water related computational modeling problems, some of which can be highly valuable as part of a rational drug design strategy. © 2012 Wiley Periodicals, Inc.     

Equilibrium and Dynamic Surface Tension of Carboxymethylchitosan and Alkyl Trimethylammonium Bromide Mixtures

A water-soluble derivative of chitosan, carboxymethylchitosan (CMCH), was mixed with alkyltrimethylammoniumbromides (C_mTAB) and was studied on the adsorption at air/water interface using equilibrium and dynamic surface tension method. The effects of surfactant and polymer concentrations, surfactant chain length, as well as pH of solution were investigated. Addition of the surfactants remarkably promotes the polymer adsorption. Increasing any one of surfactant concentration, surfactant chain length, and pH will facilitate the adsorption of the mixture whereas little effects of polymer concentration were observed. The results are explained in terms of the interaction between CMCH and C_mTAB under different conditions.     

Regioselective Nitration of Phenols by NaNO3 in Microemulsion

Highly regiospecific mononitration of phenols and substituted phenols was carried out in TX100-based microemulsion. The use of inexpensive and relatively nontoxic acidic reagent is an advantage of this method. The effect of various parameters such as concentration of NaNO₃, temperature, and agitation speed on reaction system have been investigated. Exclusive ortho-selectivity was observed for all the phenols subjected to this protocol.     

Laboratory Studies of Depressurization with a High Concentration of Surfactant in Low-Permeability Reservoirs

To solve the problem of high pressure of water injection in low permeability reservoirs, a high concentration of surfactant system was developed in this article. With the solubilization of oil in aqueous surfactant solution as a criterion, a formula was screened from anionic and nonionic-anionic surfactants, and the optimal depressurized system was obtained as follows, 13.3% surfactant HEX +2.23% n-propanol +4.47% n-butanol, the solubilization capability being up to 0.66 g/g. This system had good salt tolerance, and it exhibited water external microemulsion in the range of of 1 to 200 g/L NaCl. Core flooding results show that this high concentration of surfactant system formed water external microemulsion with the residual oil in the core, reducing the displacement pressure over 35%. Meanwhile, the effects of concentration and injection volume on depressurization were also investigated. It is indicated that a good depressurization effect was achieved after injecting 1 pore volume of the system with the salt concentration of 100 g/L.     

Preparation and characterization of nanosized TiO2 powder as an inorganic adsorbent for aqueous radionuclide Co(II) ions

In this research TiO₂ sample was synthesized by a simple sol–gel method and was characterized by X-ray diffraction (XRD), Transmission electron microscopy (TEM) and Brunauer–Emmett–Teller (BET) techniques. The XRD result indicated that the obtained product was anatase titanium dioxide with high purity, the TEM image clearly showed that the particle sizes of TiO₂ nanoparticles were in the range of 30–70 nm, and the measured BET surface area of the heated TiO₂ nanoparticles was 147.14 m²/g. In this work, the prepared TiO₂ sample was used as a new adsorbent for the adsorption of radionuclide Co(II) ions from aqueous solutions, and the influence of pH, contact time, ionic strength and temperature in the presence or absence of humic acid/fulvic acid (HA/FA) were also investigated. The experimental results indicated that the adsorption of Co(II) ions onto TiO₂ was strongly pH-dependent. Based on the surface complexation, the presence of HSs enhanced the adsorption of Co(II) ions and the influence of Co(II) adsorption onto FA–TiO₂ hybrids was much stronger than that of HA–TiO₂ at pH values of 2.0–9.0. Adsorption of Co(II) ions onto TiO₂ powder was strongly dependent on ionic strength. The adsorption process mainly occured in the first contact time of 2 h and could be fitted by a pseudo-second-order rate model. The calculated thermodynamic data indicated that the adsorption of Co(II) ions onto TiO₂ was a spontaneous process and favorable at high temperatures.     

Heterogeneous Heck Reaction in Microemulsion with Palladium Supported Na‐Y Zeolites as Catalyst

Heterogeneous Heck reaction catalyzed by Pd (NH₃)₄ ²⁺‐Na‐Y zeolite in the presence of K₂CO₃ as the base has been carried out in an oil‐in‐water microemulsion based on Triton X10 at 80°C.     

Dynamic Surface Elasticity of Polyelectrolyte/Surfactant Adsorption Films at the Air/Water Interface: Carboxylmethylchitosan and Cetyltrimethylammonium Bromide

The dynamic surface elasticity of the solution of carboxymethylchitosan (CMCH) and cetyltrimethylammonium bromide (C₁₆TAB) was measured as a function of the surfactant concentration and the surface age by the oscillating drop method. The results showed that the surface layer of the CMCH/C₁₆TAB solution transformed from loose to structured with the increase in the surfactant concentration. The surface elasticity versus the surface pressure curve during the adsorption showed different features at different surfactant concentration ranges, which was connected with the structural transformation of the surface layer. Our results show that the measurement of dynamic surface dilational properties is a powerful tool for studying the surface kinetics, which is helpful for dealing non-equilibrium systems in industry.     

Redispersibility of Acrylate Polymer Powder and Stability of Its Reconstituted Latex

The acrylate redispersible polymer powder (RPP) was produced from acrylate latex via spray drying, which was synthesized by latex polymerization with the configuration of soft core and hard shell. The powder's redispersibility and stability of its reconstituted latex were achieved through incorporating monomer methacrylic acid (MAA), which has functional carboxyl group and can provide an ionization effect in alkaline range. The influence of pH value and MAA amount on the redispersibility and stability were studied. The stabilization mechanism for reconstituted latex was also investigated. The acrylate RPP has good redispersibility at MAA of 4–5% and pH values between 9.0 and 10.0. The reconstituted latex is stable at these conditions due to high zeta potential and strong electrostatic repulsion force.     

Study on Influencing Factors of Chemical Flooding for Heavy Oil

Alkali and alkali/surfactant displacing agents are designed for two kinds of heavy oil. Results of emulsifying capacity, dynamic interfacial tension (IFT) and water-wet core flooding tests show that, although alkaline/surfactant systems exhibit better capacity in emulsification and IFT reduction, oil recovery values of alkaline/surfactant flooding are lower than those of alkaline flooding. Glass-etched micromodel tests further demonstrate that, when alkaline solution penetrates into the oil phase, water streams break into ganglia coating oil film. Water ganglia may be entrapped by narrow throats, consequently presenting a water-oil alternating slug flow. Similar water ganglia also appears in alkaline/surfactant flooding, however, water channeling along the pore surface occurs subsequently, resulting in its relatively lower oil recovery.     

DETERMINATION OF LONG-TERM STABILITY OF VITAMIN E EMULSION AND FORMATION OF MICROEMULSIONS BY USING LASER LIGHT SCATTERING AND UV ABSORPTION MEASUREMENTS

This paper presents methods of determining the long-term stability of vitamin E emulsion and formation of microemulsions. Several emulsion systems formed by using anionic, zwitterionic and cationic surfactants have been studied in the presence and absence of NaCI. Several conclusions can be drawn: (1) by using UV absorption and particle size measurements, one may be able to predict the long-term stability of an emulsion or the possibility of forming a microemulsion by measuring the initial properties of an emulsion, (2) in order to form a stable vitamin E emulsion or microemulsion, the initial properties of the emulsion should have the following features : (a) the particle size is ≤ 200 nm, (b) the surfactant system has a saturation value ≥ 1 and (c) the surfactant system can dissolve a substantial amount of vitamin E without causing an increase of the emulsion droplet size and (3) the saturation value and the stability of many vitamin E emulsion systems can be increased by adding an optimum amount of NaCI.