Exploring the potential energy surfaces of association of NO with aminoacids and related organic functional groups: the role of entropy of association

Association between NO and each of the 20 amino acids and their related organic functional groups was studied by exploring the configuration space of the potential energy of association surface by using the multiple minima hypersurface procedure. AM1 semiempirical Hamiltonian was used in order to explore such complex hypersurfaces of biological molecular interactions at finite computational times. An appropriate test with a set of NO and small molecule complexes obtained at the MP2/6-311++g(2d,2p) level of theory was also carried out. Stabilization energies of larger models were also evaluated at the conventional PBE1PBE/6-31g(d,p) DFT level. NO–aminoacid hypersurface explorations yielded that interactions of NO with NH group together with the C=O belonging to the backbone appeared predominant in all cases. Models of polar aminoacids and NO also show stable interactions with the lateral chains. Interactions with charged amino acids were found as the most stable and Lys was, undoubtedly, the preferred association. The study of these kinds of interactions must take into account the deepest and other minima because the entropy of association plays an important role. Contribution to the Serafin Fraja Memorial Issue. Dedicated to Prof. Serafín Fraga, an unforgettable friend.     

Antiprotozoal 6-substituted-5,6-dihydro-alpha-pyrones from Raimondia cf. monoica

Dichloromethane extracts of both the roots and the leaves of Raimondia cf. monoica showed in vitro antiplasmodial and leishmanicidal activities against Plasmodium falciparum and Leishmania panamensis, respectively. Three 6-substituted 5,6-dihydro-2H-pyran-2-ones were isolated. (1) and (2) were identified as (6S)-(5'-oxohepten-1'E,3'E-dienyl)-5,6-dihydro-2H-pyran-2-one (1) and (6R)-(5'-oxohepten-1'Z,3'E-dienyl)-5,6-dihydro-2H-pyran-2-one (2), respectively. (-)-Arentilactone (3) was also isolated. The structure of the new compound (1) was determined by spectroscopic methods; additional spectroscopic data for (2) are reported for the first time.     

In vivo PHYTOCHROME-MEDIATED PERCEPTION OF REFLECTED LIGHT SIGNALS

The spectrophotometric assay of phytochrome in vivo in etiolated plant material was used to determine the effects of changes in reflected light on the state of the photoreceptor in etiolated seedlings exposed simultaneously to direct and reflected light. Changes in reflected light that were small in terms of the total (direct + reflected) radiation incident on the seedlings produced detectable changes in the state of phytochrome in vivo. The contribution of reflected light to the state of phytochrome in vertical organs was greater than expected from its low contribution to total incident light. These data from laboratory studies complement and are consistent with results of field studies on the effects of light reflected from neighboring vegetation on plant growth under natural radiation conditions.     

Solid-phase synthesis of fullerene-peptides

The solid-phase synthesis of peptides (SPPS) containing [60]fullerene-functionalized amino acids is reported. A new amino acid, fulleropyrrolidino-glutamic acid (Fgu), is used for the SPPS of a series of analogues of different length based on the natural Leu(5)-Enkephalin and on cationic antimicrobial peptides. These fullero-peptides were prepared on different solid supports to analyze the influence of the resin on the synthesis. Optimized protocols for the coupling and deprotection procedures were determined allowing the synthesis of highly pure peptides in sufficient quantities for evaluation of biological activities. In particular, to avoid side reactions of the fullerene moiety with bases and nucleophiles, the removal of the protecting groups was performed under inert conditions (nitrogen or argon in the dark). We have encountered serious problems with the recovery of the crude compounds, especially when Fgu was inserted in the proximity of the resin core as fullero-peptides tend to remain embedded inside the resin. Eventually, all of the fullero-peptides were easily purified, and the cationic peptides were tested for their antimicrobial activities. They displayed a specific activity against the Gram-positive bacterium S. aureus and also lysed erythrocytes. The availability of a fullero-amino acid easily useable in the SPPS of fullero-peptides may thus open the way to the synthesis of new types of biologically active oligomers.     

Selective fluorescence sensing of Li+ in an aqueous environment by a ferrocene-anthracene-linked dyad

A new 1-(9-anthryl)-4-ferrocenyl-2-aza-1,3-butadiene showing selective fluorescence enhancement upon binding to lithium cations over other alkaline cations in aqueous environment has been conveniently synthesized and characterized. [structure: see text]     

Synthesis and Structural Characterization of the Trimeric Furoxan (= Furazan 2-Oxide) System,a New Potent Vasodilating Moiety

The synthesis, structural characterization, and NO donor properties of a series of terfuroxan (= terfurazan trioxide) derivatives 1a–h and 2a–j are reported (Schemes 1 and 2). Structural assignments were confirmed principally by mass and ¹³C- and ¹H-NMR spectroscopy. The extent and the initial rate of NO release in the presence of thiol cofactor was evaluated for each derivative. Vasodilator effects of all the terfuroxan derivatives were evaluated on endothelium-denuded strips of rat aorta precontracted with noradrenaline. Concentration-response curves were also evaluated in the presence of 10 m?M oxyhemoglobin (HbO₂), a well known NO scavenger. The whole series displays high vasodilating potency; the most active terfuroxans ( 1a, b, g and 2i ) are 5–10 times as potent as glyceryl trinitrate taken as reference (see Table 3). The potency decrease observed in the presence of HbO₂ agrees with the involvement of NO in the vasorelaxing action. The 4,3′:4′,4″ connection (series 1 ; furoxan numbering) gives rise to the most potent compounds. The conformational factors seem to play important roles in the activity. No clear relationship between physico-chemical properties of the substituents and potencies of derivative emerges.     

THE PHOTODYNAMIC EFFECT OF ROSE BENGAL ON PROTEINS OF THE MITOCHONDRIAL INNER MEMBRANE

Photodynamic action promoted by Rose Bengal was evaluated in solutions of unsaturated fatty acids or histidine, and on beef heart submitochondrial particles. Rose Bengal-promoted photooxidation of histidine was mainly due to the opening up of the imidazole ring by singlet oxygen. Photosensitization of polyunsaturated fatty acids (PUFA) resulted in oxygen consumption and thiobarbituric acid-reactive substances (TBARS) formation, the extent of which was linearly related to the increasing degree of unsaturation. Photosensitization of submitochondrial particles caused oxygen consumption and TBARS production. These processes involved two different reaction components: during the first, most of the mitochondrial proteins were inactivated, the most sensitive being succinate dehydrogenase and cytochrome c. The values for the rate ratios of [TBARS] formation/[O2] consumption for the first and second phase were 0.36 and 1.32%, respectively, pointing to a larger contribution of lipid peroxidation during the second phase. The calculation of the rate constants for reaction of singlet oxygen with mitochondrial proteins suggests that singlet oxygen is more reactive towards proteins than to PUFA. The biological role of this selectivity is discussed in terms of the mitochondria as one of the first targets for photosensitized reactions.     

Are cyclopentadienyl complexes more stable than their pyrrolyl analogues?

Metal-η⁵-cyclopentadienyl (M-Cp) and metal-η⁵-pyrrolyl (M-pyr) bond dissociation enthalpies in group 4 complexes were determined from DFT/B3LYP calculations with a VTZP basis set. Thermochemical cycles involving calculated enthalpies of ligand exchange reactions and experimental values of ligand electron affinities and M-Cl bond dissociation enthalpies were applied to [M(η⁵-X)Cl₃] piano stool complexes (M = Ti, Zr, Hf; X = pyr, Cp), allowing a comparative study of those metal-ligand bond strengths. The results indicate that both ligands establish weaker bonds with Ti than with the heavier elements, Zr and Hf. Very similar bond dissociation enthalpies were obtained for pyrrolyl and cyclopentadienyl (within 1 kcal mol⁻¹), suggesting that the well known difference in reactivity between those families of complexes should derive from kinetic rather than thermodynamic causes.     

Effect of inhibitors released during steam-explosion pretreatment of barley straw on enzymatic hydrolysis

The influence of the liquid fraction (prehydrolysate) generated during steam-explosion pretreatment (210°C, 15 min) of barley straw on the enzymatic hydrolysis was determined. Prehydrolysate was analyzed for degradation compounds and sugars' content and used as a medium for enzymatic hydrolysis tests after pH adjusting to 4.8. Our results show that the presence of the compounds contained in the prehydrolysate strongly affects the hydrolysis step (a 25% decrease in cellulose conversion compared with control). Sugars are shown to be more potent inhibitors of enzymatic hydrolysis than degradation products.     

Inorganic species in water and sediments of the Lamone and Marzeno rivers ecosystem

Analytical results are reported for the determination of inorganic species in water and sediments sampled in the Lamone and Marzeno rivers ecosystem. The species determined are Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb, Zn, Hg, F-, Cl- Br-, NO3-, SO4--, Na+, K+, Mg++, Ca++, NH4+ in superficial water, and Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb, Zn, Hg in sediments. For all the elements, in addition to detection limits, precision and accuracy are given: the former, expressed as relative standard deviation (s(r)), and the latter, expressed as relative error (e), were good, being in all cases lower than 6%.