Myoglobin-CO substate structures and dynamics: multidimensional vibrational echoes and molecular dynamics simulations

Spectrally resolved infrared stimulated vibrational echo data were obtained for sperm whale carbonmonoxymyoglobin (MbCO) at 300 K. The measured dephasing dynamics of the CO ligand are in agreement with dephasing dynamics calculated with molecular dynamics (MD) simulations for MbCO with the residue histidine-64 (His64) having its imidazole epsilon nitrogen protonated (N(epsilon)-H). The two conformational substate structures B(epsilon) and R(epsilon) observed in the MD simulations are assigned to the spectroscopic A(1) and A(3) conformational substates of MbCO, respectively, based on the agreement between the experimentally measured and calculated dephasing dynamics for these substates. In the A(1) substate, the N(epsilon)-H proton and N(delta) of His64 are approximately equidistant from the CO ligand, while in the A(3) substate, the N(epsilon)-H of His64 is oriented toward the CO, and the N(delta) is on the surface of the protein. The MD simulations show that dynamics of His64 represent the major source of vibrational dephasing of the CO ligand in the A(3) state on both femtosecond and picosecond time scales. Dephasing in the A(1) state is controlled by His64 on femtosecond time scales, and by the rest of the protein and the water solvent on longer time scales.     

Student-Designed Multistep Synthesis Projects in Organic Chemistry

The incorporation of research projects into undergraduate chemistry courses provides a perspective that is fundamentally unavailable in most laboratory experiences. While independent, multistep synthesis projects in organic chemistry have been reported previously, most efforts have been directed at relatively restricted, closely guided research plans with modest student participation in the experimental design. We have implemented a more open-ended synthesis project, limited principally by cost, safety and availability of materials. In the second semester of the sophomore organic sequence, students develop multiple drafts of a plan for a three-to-four-step synthesis. Subsequently, students obtain their own literature protocols for the individual steps. The synthesis is performed over three four-hour laboratory periods. The students conclude this project with a poster presentation of the results at the end of the semester. Evaluation of the students work focuses not only on the successful synthesis of the target but also on planning, troubleshooting, purification, and spectral analysis.     

Functional polymers and sequential copolymers by phase transfer catalysis. XXVIII. Synthesis and characterization of alternating block copolymers and polyformals of polyisobutylene and aromatic polyether sulfone

Alternating—i.e., -(A-B)_n- type—block copolymers of polyisobutylene (PIB) and aromatic polyether sulfone (PSU) have been prepared by phase transfer catalyzed Williamson polyetherification of α,ω-di(phenol)PIB with α,ω-di(chloroallyl)- or -(bromobenzyl)PSU. Block copolymers of the two prepolymers were also synthesized by the phase transfer catalyzed polyetherification of methylene chloride with α,ω-di(phenol)PIB and α,ω-di(phenol)PSU (bisphenol-A-terminated PSU). This method leads to -[(A)_x-(B)_y]_n- block copolymers with formal linkages between segments. At sufficiently high segment lengths, both types of block copolymers exhibit two distinct T_gs, indicating phase separation into rubbery PIB and glassy PSU domains.     

The Stereochemistry of simple enols in solution

On the basis of their ¹H n.m.r. spectra it is concluded that vinyl alcohol and $\text{trans}$-1-propenol exist mainly in the $\text{syn}$-conformation and that $\text{cis}$-1-propenol and 2-methyl-1-propenyl exist mainly in the $\text{anti}$ conformation.     

Simplified electron ejection in Fourier transform ion cyclotron resonance mass spectrometry by suspended trapping

Suspended trapping is used to eject electrons in negative-ion Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometric experiments. In contrast to electron ejection by resonant excitation of the trapping motion, suspended trapping involves allowing the electrons to escape along the z-axis (perpendicular to the trap plates) while the trapping potential is briefly removed. The duration of this event is sufficiently short (～10 μs) so that ion losses are negligible; the overall effect is that of a ‘high-pass mass filter’. Suspended trapping is simpler to implement and more generally applicable to various cell geometries than resonant electron ejection. The effectiveness of the suspended trapping technique is not compromised by the anharmonicity of the potential well in ‘elongated’ ICR traps, but depends simply on the time it takes the electrons to escape the cell. Finally, a small, positive offset potential (～+0.25 V) applied to the trap plates during the suspended trapping event increases the efficiency of the ejection.     

Mixed nitrosyl/phosphinidene and nitrene/phosphinidene clusters of ruthenium

Reaction of the aminophosphinidene complex [Ru5(CO)15(mu 4-PNPri2)] 1 with [PPN][NO2] (PPN = Ph3P=N=PPh3) led to the mixed nitrosyl/phosphinidene cluster complex [PPN][Ru5(CO)13(mu-NO)(mu 4-PNPri2)] 2 which is transformed into the novel nitrene/phosphinidene cluster [Ru5(CO)10(mu-CO)2(mu 3-CO)(mu 4-NH)(mu 3-PNPri2)] 3 via treatment with triflic acid.     

Synthetic, structural and spectroscopic studies of (pseudo)halo(1,3-di-tert-butylimidazol-2-ylidine)gold complexes

A series of (pseudo)halo(1,3-di-tert-butylimidazol-2-ylidine)gold complexes [(But2Im)AuX](X = Cl, Br, I, CN, N3, NCO, SCN, SeCN, ONO2, OCOCH3, CH3) have been synthesized and characterised spectroscopically and structurally. 13C NMR chemical shifts for the carbene carbon vary widely with differing ancillary anion, correlating well with the sigma-donor ability of the latter and with the M-C(carbene) bond distance. These results reinforce the notion that N-heterocyclic carbene ligands are primarily sigma-donor ligands with little pi-acceptor ability.     

Reactions of triosmium clusters with organic azides; x-ray crystal structures of [Os3(CO)10(NCMe)(N3COPh)], [Os3(μ-H)(CO)10(HN3Ph)], and [Os3(μ-H)2(CO)9(μ3-NPh)]

Organic azides [N₃R] react with [Os₃(CO)₁₁(NCMe)] and with [Os₃(μ-H)₂(CO)₁₀] to form [Os₃(CO)₁₀(NCMe)(N₃COR)] (R  Ph) and [Os₃(μ-H)(CO)₁₀(HN₃R)] (R  Ph, n-Bu, CH₂Ph, cyclo-C₆H₁₁), respectively; the latter may be converted to [Os₃(μ-H)₂(CO)₉(μ₃-NR)] by thermolysis; the molecular structure of the phenyl derivative of each class of compound has been confirmed by x-ray analysis.     

The crystal structure of tetrakis(methyldiphenylphosphine)iridium(I) tetrafluoroborate with cyclohexane of solvation: Ir[P(C6H5)2CH3]4BF4 - C6H12

The crystal structure of tetrakis(methyldiphenylphosphine)iridium(I) tetrafluoroborate with cyclohexane of solvation, [Ir(PPh₂Me)₄]BF₄·C₆H₁₂, has been determined from a three-dimensional X-ray analysis. The compound has been analysed in space group C₂/c of the monoclinic system. There are twelve molecules (i.e. 1.5 molecules per asymmetric unit) in a cell of dimensions a = 36.804(8), b = 22.93(2), c = 21.676(4) Å, β = 121.41(1)°. Block-diagonal least-squares refinement has given a final R-factor of 0.060 for 7905 reflections having I > 3σ(I).The structure consists of two crystallographically distinct, but structurally similar molecules, one on a general position and one on a crystallographic two-fold axis. The phosphine ligands around the iridium atoms are in a very distorted square-planar arrangement. The reactions of the cation axe discussed in terms of this structure.     

Metal to ligand group transfer reactions : II. Reactions of some π-allylrhodium(I) complexes with trifluoroacetic acid and alkyl,acyl and trimethyltin halides

Rh(π-C₃H₅)(PF₃)₃ (I), reacts with trifluoroacetic acid to form propene and [Rh(CF₃COO)(PF₃)₂]₂ (II). I reacts with t-butyl bromide to give [RhBr(PF₃)₂]₂ and a mixture of propene and 2-methyl-1-propene and with n-propyl bromide to give propene and [RhBr(PF₃)₂]₂. Rh(π-C₃H₅)(PPh₃)₂ (III), and t-butyl bromide yield propene and 2-methyl-1-propene. In these reactions a mechanism involving β-hydrogen abstraction and hydrogen migration via the metal to carbon is proposed. When III reacts with Me₃SnCl the Me₃Sn—moiety migrates intact to the π-allyl group. I reacts with acetyl chloride to give propene, [RhCl(PF₃)₂]₂ and the carbonyl rhodium complex Rh₂Cl₂(PF₃)₃(CO). II does not apparently undergo phosphine ligand exchange unlike the analogous halogeno-bridged dimers.