Kinetics of the reactions between [S(2)MoS(2)Cu(SC(6)H(4)R-4)](2-)(R = MeO, H, Cl or NO(2)) and CN(-): substitution mechanism at a 3-coordinate Cu(I) site

The kinetics of the reaction between [S(2)MoS(2)Cu(SC(6)H(4)R-4)](2-)(R = MeO, H, Cl or NO(2)) and CN(-) to form [S(2)MoS(2)CuCN](2-) have been studied in MeCN using stopped-flow spectrophotometry. In all cases, the rate law is of the form, Rate ={k+k(2)(R)[CN(-)]}[S(2)MoS(2)Cu(SC(6)H(4)R-4)(2-)]. It is proposed that both k and k correspond to associative substitution mechanisms. The k pathway involves attack by CN(-) at the copper site followed by dissociation of the thiolate. The k pathway involves attack of the solvent (MeCN) at the copper site, followed by dissociation of the thiolate to form [S(2)MoS(2)Cu(NCMe)](-). Subsequent rapid substitution of the coordinated solvent by cyanide produces [S(2)MoS(2)CuCN](2-). The evidence that both the k and k pathways involve associative mechanisms are: (i) the 4-R-substituent on the thiolate ligand has a similar effect on both k and k, with electron-withdrawing 4-R-substituents facilitating substitution; (ii) both the k and k pathways are associated with similar activation parameters (for k(1)(H): DeltaH++ = 5.5 +/- 0.5 kcal mol(-1), DeltaS++ = -23.9 +/- 2.0 cal deg(-1) mol(-1); for k(2)(H): DeltaH++ = 2.3 +/- 0.5 kcal mol(-1), DeltaS++ = - 23.9 +/- 2.0 cal deg(-1) mol(-1)) and (iii) addition of C(6)H(5)S(-) results in a similar increase in both k and k.     

Effects of hydrolysis on the delta13C values of individual amino acids derived from polypeptides and proteins

This study investigates the effects of hydrolysis on the delta13C values of individual amino acids (IAAs) derived from polypeptide standards, and modern and ancient bone collagen. All IAAs were derivatised to their trifluoroacetyl/isopropyl (TFA/IP) esters for delta13C determination using gas chromatography/combustion/isotope ratio mass spectrometry (GC/C/IRMS). Firstly, authentic single poly amino acid standards (SPAAs; n = 5) were hydrolysed for 4, 10, 24 and 48 h. As expected, IAA yields increased as a function of hydrolysis time. Significantly, it was only after 24 h of hydrolysis that IAA delta13C values were statistically identical to bulk SPAA values for all five standards. The accuracy of IAA delta13C values was thus shown to be a function of yield; however, poly phenylalanine demonstrated accurate IAA delta13C values with yields of only 1.4 and 4.3%, after 24 and 48 h of hydrolysis time, respectively. Authentic mixed poly amino acid standards (MPAAs; n = 5) comprising two different amino acids were then hydrolysed for 24 h. Percentage recoveries ranged from 36-95%. Estimates of bulk MPAA delta13C values calculated from measured IAA delta13C values agreed within experimental error with measured bulk MPAA values for three out of the five standards. Finally, the experimental procedure was applied to modern rat (MBCs; n = 20) and ancient ovi-caprine and bovine (ABCs; n = 27) bone collagen samples where the delta13C values of 12 out of its 18 constituent amino acids were determined. Estimated bulk MBC and ABC delta13C values were calculated from constituent amino acid delta13C values using mass balance. With the exclusion of three ABC samples, calculated bulk bone collagen delta13C values (delta13C(BCcal)) were shown to correlate extremely well with measured bone collagen values (delta13C(BCmes)) for both modern and ancient samples, where R2 = 0.91 and 0.84, respectively. Significantly, the variation between calculated and measured bone collagen values (Delta13C(BCcal-BCmes)) exhibited similar ranges for both MBC (from -2.6 to +1.2 per thousand ) and ABC (from -2.7 to +2.2 per thousand ) samples, providing evidence for the preservation of intact collagen in the ancient samples. These results demonstrate that the experimental procedures employed in the acid hydrolytic cleavage of peptides or proteins to their constituent amino acids does not involve significant isotopic fractionation.     

Quantum chemical study of the coordination of glycolic acid conformers and their conjugate bases to [Ca(OH2)n] (n=0–4) ions

A detailed exploration of the configurational and conformational space of glycolic acid and their conjugate bases has been carried out with the aid of first principles quantum chemical techniques at the B3LYP/6-311+G(d,p) and CCSD(T)/6-31G(d,p) levels of theory. The most stable configuration among the eight possible glycolic acid conformers corresponds to the E-s-cis, s-trans configuration, while the highest energy E-s-trans, s-cis conformer was found at 10.88 and 12.17 kcal mol⁻¹ higher in energy at the B3LYP/6-311+G(d,p) and CCSD(T)/6-31G(d,p) levels of theory, respectively. Upon dissociation of glycolic acid the s-cis(syn), and s-trans(anti) configurations of the glycolate anion can be formed. The anti conformer was found to be less stable than the syn one by 14.20 and 16.87 kcal mol⁻¹ at the B3LYP/6-311+G(d,p) and CCSD(T)/6-31G(d,p)) levels of theory, respectively. The computed B3LYP/6-311+G(d,p) proton affinity of the syn conformer for the protonation process affording the more stable E-s-cis, s-trans conformer, in vacuum was found to be 325.35 kcal mol⁻¹ (ΔG⁰ value). From a methodological point of view, our results confirm the reliability of the integrated computational tool formed by the B3LYP density functional model. This model has subsequently been used to investigate the interaction of Ca²⁺ ions with the glycolic acid conformers and their conjugate bases in vacuum and in the presence of extra water ligands. For the complexes of glycolic acid conformers the η²–O,O–(COOH) coordination, that is the structure that arises from the coordination of the Ca²⁺ to the carboxylic group, is the global minimum of the PES, while the η²–O(OH),O–(COOH) coordination is a local minimum found at only 1.0 and 1.3 kcal mol⁻¹ higher in energy at the B3LYP/6-311+G(d,p) and CCSD(T)/6-31G(d,p) levels of theory, respectively. Moreover, the two isomers exhibit nearly the same binding affinities, which are predicted to be 89 and 85 kcal mol⁻¹ at the B3LYP/6-311+G(d,p) and CCSD(T)/6-31G(d,p) levels of theory, respectively. The same holds also true for the complexes of the glycolate anion. The η²–O,O–(COO⁻) coordination involving the syn conformer of the glycolato ligand, is the global minimum, while the η²–O(OH),O–(COO⁻) one lies at 1.5 and 5.6 kcal mol⁻¹ higher in energy at the B3LYP/6-311+G(d,p) and CCSD(T)/6-31G(d,p) levels of theory, respectively. The other conformer with an η²–O,O–(COO⁻) coordination involving the anti conformer of the glycolato ligand, is less stable by only 0.2 kcal mol⁻¹ at both levels of theory. Noteworthy is the trend seen for the incremental binding energy due to the successive addition of water molecules to [HOCH₂C(O)O]Ca²⁺ species; the computed values are 30.4, 26.8, 22.9 and 16.2 kcal mol⁻¹ at the B3LYP/6-311+G(d,p) level of theory for the mono-, di-, tri- and tetraaqua complexes, respectively. This trend arising from the repulsion of the dipoles between the water ligands and from unfavorable many body interactions is in accordance with those anticipated from electrostatic considerations. The Ca(II)-water interaction weakens with increasing coordination of the metal. Obviously, it is the electrostatic nature of the Ca(II)-water interactions that accounts well for the computed coordination geometries of the cationic (aqua)(glycolato)calcium complexes. Calculated structures, relative stability and bonding properties of the conformers and their complexes with [Ca(OH₂)_n]²⁺ (n=0–4) ions are discussed with respect to computed electronic and spectroscopic properties, such as charge density distribution, harmonic vibrational frequencies and NMR chemical shifts.     

A method for the temperature calibration of pushrod dilatometers

A method for the temperature calibration of pushrod dilatometers and thermomechanical analysis systems using the melting points of metal standards has been established. With this technique, the measured melting temperatures of high-purity metal standards are determined from the sharp change in the length curve which accompanies melting. This procedure was used for the absolute temperature calibration of a pushrod dilatometer capable of operation up to 2000 °C. The results of this calibration show that the technique can be used with a high degree of accuracy and confidence.

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Zusammenfassung Mit Hilfe von Schmelzpunkten metallischer Standards wurde eine Methode zur Temperatureichung von Schubstangendilatometern und TMA-Systemen entwickelt. Die verwendete Technik basiert darauf, daß beim Erreichen der Schmelztemperatur des hochreinen, scheibenförmigen Metallstandards, der zusammen mit einem neutralen Probekörper verwendet wird, eine deutliche, spontan einsetzende Längenänderung in der Dilatometerkurve erkennbar wird. Dieses Verfahren wurde zur absoluten Temperatureichung eines Schubstangen-Dilatometers, das bis 2000 °C arbeitet, angewandt. Die Ergebnisse dieser Kalibrierung zeigen, daß diese Technik mit einem hohen Grad an Genauigkeit und Zuverlässigkeit eingesetzt werden kann.

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, -. - . , 2000 °. , .

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On sabbatical leave from the University of Rhode Island, Kingston, RI 02881, U.S.A.

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The authors wish to express their thanks to Mr. E. Braun, Netzsch Gerätebau, for his work with the dilatometer and the preparation of the test samples.     

Singlet oxygen formation in monomeric and aggregated porphyrin c

The absorption and fluorescence spectra of monomeric and aggregated species present in aqueous solutions of porphyrin c have been resolved by steady-state and time-resolved spectroscopy. The dependence of the singlet oxygen formation yield (phi delta) on excitation wavelength has also been determined. In the Q-band spectral region, the aggregate absorption and emission spectra are shifted to longer wavelengths with respect to the monomer spectrum with phi delta (monomer) = 0.59 and phi delta (aggregate) = 0.33. The relevance of these findings to the optimization of irradiation conditions in tumour phototherapy using porphyrin c are discussed.     

The first structural characterisation of a group 2 metal alkylperoxide complex: comments on the cleavage of dioxygen by magnesium alkyl complexes

A new high-yield synthesis of [(PhCH(2))(2)Mg(thf)(2)] and [[(PhCH(2))CH(3)Mg(thf)](2)] via benzylpotassium has allowed a simple entry into benzylmagnesium coordination chemistry. The syntheses and X-ray crystal structures of both [(eta(2)-Me(2)NCH(2)CH(2)NMe(2))Mg(CH(2)Ph)(2)] and [eta(2)-HC[C(CH(3))NAr'](2)Mg(CH(2)Ph)(thf)] (Ar'=2,6-diisopropylphenyl) are reported. The latter beta-diketiminate complex reacts with dioxygen to provide a 1:2 mixture of dimeric benzylperoxo and benzyloxo complexes. The benzylperoxo complex [[eta(2)-HC[C(CH(3))NAr'](2)Mg(mu-eta(2):eta(1)-OOCH(2)Ph)](2)] is the first example of a structurally characterised Group 2 metal-alkylperoxo complex and contains the benzylperoxo ligands in an unusual mu-eta(2):eta(1)-coordination mode, linking the two five-coordinate magnesium centres. The O[bond]O separation in the benzylperoxo ligands is 1.44(2) A. Reaction of the benzylperoxo/benzyloxo complex mixture with further [eta(2)-HC[C(CH(3))NAr'](2)Mg(CH(2)Ph)(thf)] results in complete conversion of the benzylperoxo species into the benzyloxo complex. This reaction, therefore, establishes the cleavage of dioxygen by this system as a two-step process that involves initial oxygen insertion into the Mg[bond]CH(2)Ph bond followed by O[bond]O/Mg[bond]C sigma-bond metathesis of the resulting benzylperoxo ligand with a second Mg[bond]CH(2)Ph bond. The formation of a 1:2 mixture of the benzylperoxo and benzyloxo species indicates that the rate of the insertion is faster than that of the metathesis, and this is shown to be consistent with a radical mechanism for the insertion process.     

Syntheses and ligand interconversions of copper(II) derivatives of the metalloligand [Pt2(mu-S)2(PPh3)4

The reactivity of the metalloligand [Pt2(micro-S)2(PPh3)4] towards a variety of copper(II)-ligand systems has been studied. Reaction of [Pt2(mu-S)2(PPh3)4] with copper(II) halide complexes [CuCl2L](L = 2,2'-bipyridine and 1,10-phenanthroline) gave trinuclear dicationic products [Pt2(mu-S)2(PPh3)4CuL]2+, and the 8-hydroxyquinolinate (hq) complex [Cu(hq)2] gave [Pt2(mu-S)2(PPh3)4Cu(hq)]+, isolated as their BPh4- or PF6- salts. Related cationic complexes with other ancillary amine ligands (1,2-diaminoethane, 1,2-diaminopropane, 1,2-diaminocyclohexane) were obtained by reactions of [Pt2(mu-S)2(PPh3)4] with CuCl2 and the amine. In contrast, reaction of [Pt2(mu-S)2(PPh3)4] with CuCl2 and NH3 in methanol gave the intensely blue methoxy-bridged dicopper complex [{Pt(2)(mu-S)2(PPh3)4Cu(OMe)}2]2+, isolated as its hexafluorophosphate salt. Copper beta-diketonate complexes reacted with [Pt2(mu-S)2(PPh3)4] giving [Pt2(mu-S)2(PPh3)4Cu(beta-diketonate)]+PF6- complexes, with the CH3COCHCOCH3(acac) and CF3COCHCO(2-thienyl)(tta) derivatives characterised by X-ray structure determinations. The local Cu(II) environment ranges from distorted square-planar to an intermediate form of square-planar and tetrahedral. The beta-diketonate derivatives show varying stability towards methanolysis, giving [{Pt2(mu-S)2(PPh3)4Cu(OMe)}2]2+.     

Reaction of some tertiary phosphines and phosphites with [Co(η5-C5H5)(S2C2{CN}2)]

Reaction of the 16 electron monomer [Co(η⁵-C₅H₅)(S₂C₂{CN}₂)] with various tertiary phosphines and phosphites (L) gives readily the 18 electron monomers [Co(η⁵-C₅H₅)(S₂C₂{CN}₂)L] which for L = P(OR)₃ have J($\text{P}$C₅$\text{H}$₅) ca. 6 Hz but J($\text{P}$C₅$\text{H}$₅) = 0 for L = PR₃.