Development and application of a simple routine method for the determination of selenium in serum by octopole reaction system ICPMS

The aim of the study was to develop an inductively coupled plasma mass spectrometry (ICPMS) method for robust and simple routine determination of selenium in serum. Polyatomic interferences on ⁷⁶Se, ⁷⁷Se, and ⁷⁸Se were removed by applying an octopole reaction system ICPMS with the reaction cell pressurized with H₂ gas. We developed a novel simple optimization routine for the H₂ gas flow based on a signal-to-noise ratio (SNR) calculation of the selenium signal measured in a single selenium standard. The optimum H₂ flow was 2.9 mL min^–1. The selenium content in serum was determined after a 50-fold dilution with 0.16 M HNO₃ and quantified by using addition calibration and gallium as an internal standard. The method detection limit was 0.10 g L^–1 for ⁷⁶Se and ⁷⁸Se and 0.13 g L^–1 for ⁷⁷Se. Human serum samples from a case-control study investigating if selenium was associated with risk of colorectal adenoma were analyzed. The average selenium concentration for the control group (n=768) was 137.1 g L^–1 and the range was 73.4–305.5 g L^–1. The within-batch repeatability (a batch is ten samples) estimated from 182 replicate analyses was 6.3% coefficient of variation (CV), whereas the between-batch repeatability was 7.4% CV estimated from 361 replicates between batches. The method accuracy was evaluated by analysis of a human serum certified reference material (Seronorm Serum level II, Sero A/S, Norway). There was a fairly good agreement between the measured average of 145±3 g L^–1 (n=36) and the certified value of 136±9 g L^–1. In addition the method was successfully applied for analysis of zinc serum concentrations without further optimization. For the Seronorm certified reference material a value of 911±75 g L^–1 (n=31) for zinc was obtained, which corresponds well to the certified zinc value of 920±60 g L^–1.     

Kristallstruktur und Konformation eines linearen Pentapyrrols

The crystal structure of the pentapyrrin1 was determined by X-ray diffraction methodes at two temperatures (298K and 97K). It is the first structure determination of a linear polypyrrole with more than four pyrrole rings. In the crystal, the molecule is located on a crystallographic two-fold axis, which passes through the central pyrrole ring. It assumes a helical overall-conformation, which is stabilized by intramolecular hydrogen bonding. The acidic proton at the nitrogen atom of the central pyrrolic ring is disordered, being observed with half occupancy at two symmetry-equivalent positions off the crystallographic diad. Attempts to remove the disorder by cooling to 97K were unsuccessful, since no indication for a phase transition was detected.

     

Chiral capillary electrophoresis: facts and fiction on the reproducibility of resolution with randomly substituted cyclodextrins

Comparative enantioseparation of the enantiomers of 1,1'-binaphthyl-2,2'-diyl hydrogen phosphate was performed with cyclodextrin (CD)-modified capillary electrophoresis (CE). Two single isomers, beta-CD, heptakis(2,3,6-tri-O-methyl)-beta-CD (TM-beta-CD), and heptakis(2,6-di-O-methyl)-beta-CD (DM-beta-CD) of 98% purity as well as heptakis(2,3-di-O-acetyl)-beta-CD were used and compared in terms of resolution power to randomly methylated and corresponding acetylated beta-CDs, which were synthesized in our laboratory. The methylated ones were characterized by means of matrix-assisted laser desorption/ionization-time of flight-(MALDI-TOF) mass spectrometry. By testing defined mixtures of single isomers and comparing their resolution power to randomly substituted CDs of similar degree of substitution we could show, that a simple characterization by the average molecular degree of substitution (DS) is not sufficient. In order to get reproducible results, a clearly defined substitution pattern is necessary, which is not given using randomly substituted CDs. Taken together, a validation of a chiral separation with "undefined" CD derivatives is almost impossible.     

Characteristics of in-out intermittency in delay-coupled FitzHugh–Nagumo oscillators

We analyze a pair of delay-coupled FitzHugh–Nagumo oscillators exhibiting in-out intermittency as a part of the generating mechanism of extreme events. We study in detail the characteristics of in-out intermittency and identify the invariant subsets involved – a saddle fixed point and a saddle periodic orbit – neither of which are chaotic as in the previously reported cases of in-out intermittency. Based on the analysis of a periodic attractor possessing in-out dynamics, we can characterize the approach to the invariant synchronization manifold and the spiralling out to the saddle periodic orbit with subsequent ejection from the manifold. Due to the striking similarities, this analysis of in-out dynamics also explains in-out intermittency     

Structures of oxaliplatin‐oligonucleotide adducts from DNA

Oxaliplatin, [(1R,2R)‐cyclohexane‐1,2‐diamine](ethanedioato‐O,O')platinum(II) shows a great efficiency against colorectal cancer. Although the mode of action of oxaliplatin is not yet understood, it is commonly accepted that binding of oxaliplatin to DNA prevents DNA synthesis and alters protein to DNA binding. In order to elucidate the modified DNA–protein interaction and thus to understand the mechanisms leading to cellular misinterpretation of DNA information and apoptosis, we have identified the preferential binding sites and the dynamics of the oxaliplatin‐DNA intrastrand and interstrand adducts at the oligomer level using high‐performance liquid chromatography/electrospray ionization‐tandem mass spectrometry (HPLC/ESI‐MS/MS) and HPLC/inductively coupled plasma‐MS for quantitative studies. We used a combination of benzonase, alkaline phosphatase and Nuclease S1 for digestion. This digestion procedure allows the study of platinated oligomeric nucleotides and more complex interstrand adducts. The digestion products were mostly chromatographically separated and characterized using HPLC/ESI‐ion trap MS/MS experiments. We could show that the adducts to guanine and adenine are quite dynamic; that is, the ratios are changing for several days. In addition, the resulting adducts provide evidence for the action of the digesting enzymes and indicate that the adduct spectrum at the oligomeric level is different to that at the commonly studies dinucleotide level. Copyright © 2012 John Wiley & Sons, Ltd.     

Cross‐metathesis of C‐Glycosides and Peptides

Peptides bearing an acryloyl residue at their N‐terminus were coupled with various C‐glycosides in an equimolar ratio via cross‐metathesis. The newly formed olefin was obtained with high E/Z selectivity in satisfying to high yields with low homodimerization of the starting materials. The posttranslational cross‐metathesis approach was shown to be suitable for the combinatorial synthesis of a small library of C‐glycopeptides.     

Fibril Structure Demonstrates the Role of Iodine Labelling on a Pentapeptide Self-Assembly

Iodination has long been employed as a successful labelling strategy to gain structural insights into proteins and other biomolecules via several techniques, including Small Angle X-ray Scattering, Inductively Coupled Plasma Mass Spectrometer (ICP-MS), and single-crystal crystallography. However, when dealing with smaller biomolecular systems, interactions driven by iodine may significantly alter their self-assembly behaviour. The engineering of amyloidogenic peptides for the development of ordered nanomaterials has greatly benefitted from this possibility. Still, to date, iodination has exclusively been applied to aromatic residues. In this work, an aliphatic bis-iodinated amino acid was synthesized and included into a custom pentapeptide, which showed enhanced fibrillogenic behaviour. Peptide single crystal X-ray structure and powder X-ray diffraction on its dried water solution demonstrated the key role of iodine atoms in promoting intermolecular interactions that drive the peptide self-assembly into amyloid fibrils. These findings enlarge the library of halogenated moieties available for directing and engineering the self-assembly of amyloidogenic peptides.     

Growth of one-dimensional Pd nanowires on the terraces of a reduced SnO2(101) surface

Palladium, vapor-deposited at room temperature on a reduced SnO2(101) surface, forms one-dimensional islands, one atomic layer high, 5 A wide, and up to 350 A long. Scanning tunneling microscopy shows that neighboring islands do not merge. First-principles calculations reveal the atomistic processes that lead to this, for metal oxide substrates unusual, overlayer growth. Formation of 1D islands is mediated by a large anisotropy in surface diffusion, strong Pd-Sn interaction, and the lack of stable binding sites at the sides of the Pd islands. Nucleation is defect mediated, and the initial nucleation site determines the width of the resulting nanocluster.