Synthesis of novel 3'-C-methylene thymidine and 5-methyluridine/cytidine H-phosphonates and phosphonamidites for new backbone modification of oligonucleotides

Novel 5'-O-DMT- and MMT-protected 3'-C-methylene-modified thymidine, 5-methyluridine, and 5-methylcytidine H-phosphonates 1-7 with O-methyl, fluoro, hydrogen, and O-(2-methoxyethyl) substituents at the 2'-position have been synthesized by a new effective strategy from the corresponding key intermediates 3'-C-iodomethyl nucleosides and intermediate BTSP, prepared in situ through the Arbuzov reaction. The modified reaction conditions for the Arbuzov reaction prevented the loss of DMT- and MMT-protecting groups, and directly provided the desired 5'-O-DMT- and/or MMT-protected 3'-C-methylene-modified H-phosphonates 1-6 although some of them were also prepared through the manipulation of protecting groups after the P-C bond formation. The modified Arbuzov reaction of 3'-C-iodomethyl-5-methylcytidine 53, prepared from its 5-methyluridine derivative 42, with BTSP provided the 5-methylcytidine H-phosphonate 54, which was further transferred to the corresponding 4-N-(N-methylpyrrolidin-2-ylidene)-protected H-phosphonate monomer 7. 5'-O-MMT-protected 3'-C-methylene-modified H-phosphonates 5, 3, and 7 were converted to the corresponding cyanoethyl H-phosphonates 50, 51, and 56 using DCC as a coupling reagent. One-pot three-step reactions of 50, 51, and 56 provided the desired 3'-C-methylene-modified phosphonamidite monomers 8-10. Some of these new 3'-methylene-modified monomers 1-10 have been successfully utilized for the synthesis of 3'-methylene-modified oligonucleotides, which have shown superior antisense properties including nuclease resistance and binding affinity to the target RNA.     

Reaction barrier heights from an exact-exchange-based density-functional correlation model

A recent exact-exchange-based density-functional model of nondynamical and dynamical correlation [A.D. Becke, J. Chem. Phys. 122, 064101 (2005)] is tested on 70 barrier heights for a variety of reaction types: hydrogen transfer reactions, heavy-atom transfer reactions, nucleophilic substitutions, association reactions, and unimolecular rearrangements, including both even- and odd-electron systems. The mean absolute error with respect to accurate reference data is 1.4 kcal/mol. This is achieved without any refitting of the parameters of the model to the barrier height data.     

Energy migration and transfer in poly(phenylacetylene)

Studies have been made of energy migration and transfer in dilute solutions of poly(phenylacetylene). In fluid media, “down-chain” energy migration is very efficient (being limited only by chain length in the system studied); however, in a rigid matrix, the energy migration rate is significantly lower. It is suggested that segmental rotation in a fluid environment brings neighbouring chain units into conformations suitable for resonance energy transfer and also breaks conjugated sequences functioning as exciton “traps”. The broad absorption spectrum (and relatively high extinction coefficients) coupled with the efficient transfer of the energy make these substances very efficient energy transfer additives in polymer systems.     

Determination of malachite green and leucomalachite green in a variety of aquacultured products by liquid chromatography with tandem mass spectrometry detection

A liquid chromatography/tandem mass spectrometry (LC/MS/MS) method was developed for determining the residues of malachite green (MG) and leucomalachite green (LMG) in a number of aquatic species. MG and its metabolite were extracted from homogenized tissues with a perchloric acid-acetonitrile solution; the extract was centrifuged; and an aliquot was taken, concentrated, and passed through a chemically bonded octadecyl C18 solid-phase extraction column. The compounds of interest were eluted with acetonitrile, and the eluate was evaporated to dryness. The residue was dissolved in acetonitrile and diluted with water in preparation for analysis by LC/MS/MS. MG and its metabolite were determined by reversed-phase LC using a Luna C18 column with an ammonium hydroxide-formic acid buffer in acetonitrile gradient and MS/MS detection using multiple reaction monitoring. Calibration curves were linear for all analyses between 5 and 500 pg injected for both analytes, with recoveries ranging from 81% for LMG to 98% for MG in salmon spiked at the 1 ng/g level. Detection limits of 0.1 ng/g for both MG and LMG were easily obtainable using the recommended method. The operational errors, interferences, and recoveries for spiked samples compared favorably with those obtained by established methodology. The recommended method is simple, rapid, and specific for monitoring residues of MG and LMG in a number of aquatic species.     

Fundamental and applied investigations in plasma-source mass spectrometry for elemental analysis

The current status of plasma source-mass spectrometry (PS-MS) is reviewed. An overview of interference effects that exist, alternative plasma sources available, and mass spectrometer interface studies is provided. A discussion of current and future development areas in plasma source mass spectrometry is also included.     

Beiträge zur Untersuchung anorganischer nichtstöchiometrischer Verbindungen. XXXIII. Darstellung und elektronenmikroskopische Untersuchung von Hf2Nb20O54, M3Nb44O116 und MNb24O62 (M = Zr,Hf)

Contributions to the Investigation of Inorganic Non-stoichiometric Compounds. XXXIII. Preparation and Electron Microscopical Investigation of Hf₂Nb₂₀O₅₄, M₃Nb₄₄O₁₁₆, and MNb₂₄O₆₂ (M = Zr, Hf) The phases Hf₂Nb₂₀O₅₄, Zr₃Nb₄₄O₁₁₆, Hf₃Nb₄₄O₁₁₆, and β-HfNb₂₄O₆₂ have been prepared for the first time. The oxides MO₂ (M = Zr, Hf) and Nb₂O₅ were fused with (NH₄)₂SO₄ and their mixed precipitations were heated at 1350°C. In the same way we also obtained pure β-ZrNb₂₄O₆₂. The new compounds have block structures, as the structure investigation with HRTEM shows. Hf₂Nb₂₀O₅₄ is isostructural with Nb₂₂O₅₄, the same is valid for Zr₃Nb₄₄O₁₁₆ and Hf₃Nb₄₄O₁₁₆ with respect to Nb₄₇O₁₁₆. β-HfNb₂₄O₆₂ has the same structure as β-ZrNb₂₄O₆₂ and β-Nb₂₅O₆₂.     

PROBING PHOTODYNAMIC DAMAGE IN NUCLEIC ACIDS WITH A DAMAGE-SPECIFIC DNA BINDING PROTEIN: A COMPARISON OF THE B and Z DNA CONFORMATIONS

—We have employed a damage-specific DNA binding protein from human cells as a probe for base damage in polymers irradiated with white light in the presence of methylene blue. Protein-recognizable damage is introduced only into guanine-containing polymers and quenching of damage introduction by H₂O and sodium azide suggest the involvement of a singlet oxygen mechanism. Using poly d(G-m⁵C), we have demonstrated that the left-handed double helical Z conformation is much less susceptible to guanine photooxidation than is the usual B conformation. We speculate that this difference in reactivity may reflect steric hindrance at the purine C-4 position and could provide some insight into the initial steps of the reaction between singlet oxygen and guanine in nucleic acid polymers.     

The synthesis, structure and ethene polymerisation catalysis of mono(salicylaldiminato) titanium and zirconium complexes

The silyl ethers 3-But-2-(OSiMe3)C6H3CH=NR (2a-e) have been prepared by deprotonation of the known iminophenols (1a-e) and treatment with SiClMe3 (a, R = C6H5; b, R = 2,6-Pri2C6H3; c, R = 2,4,6-Me3C6H2; d, R = 2-C6H5C6H4; e, R = C6F5). 2a-c react with TiCl4 in hydrocarbon solvents to give the binuclear complexes [Ti{3-But-2-(O)C6H3CH=N(R)}Cl(mu-Cl3)TiCl3] (3a-c). The pentafluorophenyl species 2e reacts with TiCl4 to give the known complex Ti{3-But-2-(O)C6H3CH=N(R)}2Cl2. The mononuclear five-coordinate complex, Ti{3-But-2-(O)C6H3CH=N(2,4,6-Me3C6H2)}Cl3 (4c), was isolated after repeated recrystallisation of 3c. Performing the dehalosilylation reaction in the presence of tetrahydrofuran yields the octahedral, mononuclear complexes Ti{3-But-2-(O)C6H3CH=N(R)}Cl3(THF) (5a-e). The reaction with ZrCl4(THF)2 proceeds similarly to give complexes Zr{3-But-2-(O)C6H3CH=N(R)}Cl3(THF) (6b-e). The crystal structures of 3b, 4c, 5a, 5c, 5e, 6b, 6d, 6e and the salicylaldehyde titanium complex Ti{3-But-2-(O)C6H3CH=O}Cl3(THF) (7) have been determined. Activation of complexes 5a-e and 6b-e with MAO in an ethene saturated toluene solution gives polyethylene with at best high activity depending on the imine substituent.     

Objective measurement of minimal erythema and melanogenic doses using natural and solar-simulated light

Very little information exists on the amount of natural and artificial UV light required to cause sunburn and tanning in individuals with very pale skin who are at the greatest risk of developing skin cancer. We have investigated minimal erythema dose (MED) and minimal melanogenic dose (MMD) in a group of 31 volunteers with Fitzpatrick skin types I and II using an Oriel 1000 W xenon arc solar simulator and natural sunlight in Sydney, Australia. We measured the erythemal and melanogenic responses using conventional visual scoring, a chromameter and an erythema meter. We found that the average MED measured visually using the artificial UV source was 68.7 +/- 3.3 mJ/cm2 (3.4 +/- 0.2 standard erythema doses [SED]), which was significantly different from the MED of sunlight, which was 93.6 +/- 5.6 mJ/cm2 (P < 0.001) (11.7 +/- 0.7 SED). We also found significant correlations between the solar-simulated MED values, the melanin index (erythema meter) and the L* function (chromameter). The average MMD (obtained in 16 volunteers only) using solar-simulated light was 85.6 +/- 4.9 mJ/cm2, which was significantly less than that measured with natural sunlight (118.3 +/- 8.6 mJ/cm2; P < 0.05). We mathematically modeled the data for both the chromameter and the erythema meter to see if we were able to obtain a more objective measure of MED and differentiation between skin types. Using this model, we were able to detect erythemal responses using the erythema index function of the erythema meter and the a* function of the chromameter at lower UV doses than either the standard visual or COLIPA methods.