Ligand binding properties of cobalamins

The main goal of the present density functional theory calculations is a comparative study of NO, O₂, ${{\rm NO}_{2}^{-}}$ , and H₂O binding to different forms of cob(II)alamins and cob(III)alamins. The comparison of binding energies of small ligands enables one to draw conclusions regarding the stability of the studied derivatives of cobalamins as well as to define the preferred form of cobalamin for each ligand. Ligands such as NO and O₂ favor cob(II)alamins, while H₂O and ${{\rm NO}_{2}^{-}}$ cob(III)alamins. The obtained results are confronted with available experimental data. Finally, our findings allow one to divide the studied small ligands into two groups: NO and O₂ for which the coordination to cobalamins significantly weakens their internal bonds, and ${{\rm NO}_{2}^{-}}$ and H₂O for which the effect is not observed.     

First total synthesis and absolute configuration of naturally occurring (−)-hyacinthacine A7 and its (−)-1-epi-isomer

A convergent synthesis of the naturally occurring alkaloid (−)-hyacinthacine A₇, a glycosidase inhibitor of the pyrrolizidine class, is described. The homochiral starting material was tri-orthogonally protected DMDP 10, derived from d-fructose. Key steps of the synthesis were the carbon-chain lengthening at C(5′) in 10 to the α,β-unsaturated pyrrolidine ketone 12 and the one-pot construction of the bicyclic pyrrolizidine system of 13 and 14. Another key step was the partial inversion of the configuration at C(1) in 13 which led, after total deprotection, not only to the naturally occurring target molecule 9 but also to its (−)-1-epi-isomer 19.     

Ion flux through membrane channels--an enhanced algorithm for the Poisson-Nernst-Planck model

A novel algorithmic scheme for numerical solution of the 3D Poisson-Nernst-Planck model is proposed. The algorithmic improvements are universal and independent of the detailed physical model. They include three major steps: an adjustable gradient-based step value, an adjustable relaxation coefficient, and an optimized segmentation of the modeled space. The enhanced algorithm significantly accelerates the speed of computation and reduces the computational demands. The theoretical model was tested on a regular artificial channel and validated on a real protein channel-alpha-hemolysin, proving its efficiency.     

Multiresidue method for the analysis of more than 140 pesticide residues in fruits and vegetables by gas chromatography coupled to triple quadrupole mass spectrometry

A new multiresidue method has been developed and validated for the determination of more than 140 pesticide residues in cucumber and orange by gas chromatography coupled to triple quadrupole mass spectrometry (GC-QqQ-MS/MS) in a single run of 25.50 min. The triple quadrupole (QqQ) analyzer simultaneously operated in the selected reaction monitoring (SRM) and selected ion monitoring (SIM) modes, acquiring two or three transitions per compound. Samples were extracted by the application of a single-phase extraction of 10 g of sample with acetonitrile containing 1% of acetic acid, followed by a liquid-liquid partition formed by the addition of 4 g of MgSO(4) and 1 g of NaOAc. A dispersive solid-phase extraction (D-SPE) with primary secondary amine (PSA) was applied to clean up the extracts. A final concentration step was included in order to increase sensitivity in the instrumental analysis. The method was properly validated in each matrix in a wide dynamic range (10-400 microg kg(-1)): this work relies on a new quantification strategy by the use of two calibration curves to increase the dynamic range, which permitted reduction of sample dilutions and increase in sample throughput. Recovery was studied at three concentration levels (11.5, 50.0, and 150.0 microg kg(-1)), yielding values in the range 70-110% with precision values, expressed as relative standard deviation (RSD), lower than 20 and 25% for the intraday and interday precision, respectively. Limits of quantification (LOQs) were established at 10 microg kg(-1), the lowest maximum residue level (MRL) value set by the European Union in vegetables. The method was successfully applied to the analysis of pesticide residues in real samples from the southeastern Spain. Copyright (c) 2008 John Wiley & Sons, Ltd.     

Physical Stability and the Droplet Distribution of Rice Oil–in–Water Emulsion

The objective of the current study was to evaluate long-term stability of emulsions with rice oil by assessing their physical properties. For this purpose, six emulsions were prepared, their stability was examined empirically, and the most correctly formulated emulsion composition was determined using a computer simulation. Variable parameters (oil and thickener content) were indicated with optimization software based on Kleeman's method. Synthesized emulsions were studied by numerous techniques involving determination of particle size and distribution of emulsion, optical microscopy, viscosity, and novelty analysis—Turbiscan test.

The emulsion containing 50 g of oil and 1.2 g of thickener had the highest stability. Empirically determined parameters proved to be consistent with the results obtained using the computer software. The computer simulation showed that the most stable emulsion should contain from 35.93 to 50 g of oil and 0.94 to 1.19 g of thickener. The computer software based on Kleeman's method proved to be useful for fast optimization of the composition and providing parameters of stable emulsion systems. Forming emulsions based on rice oil is a chance to introduce a new, interesting representative of functional food as well as a cosmetic product.     

On the spectral and modulational stability of periodic wavetrains for nonlinear Klein-Gordon equations

In this contribution, we summarize recent results [8, 9] on the stability analysis of periodicwavetrains for the sine-Gordon and general nonlinearKlein-Gordon equations. Stability is considered both from the point of view of spectral analysis of the linearized problem and from the point of view of the formal modulation theory of Whitham [12]. The connection between these two approaches is made through a modulational instability index [9], which arises from a detailed analysis of the Floquet spectrum of the linearized perturbation equation around the wave near the origin. We analyze waves of both subluminal and superluminal propagation velocities, as well as waves of both librational and rotational types. Our general results imply in particular that for the sine-Gordon case only subluminal rotationalwaves are spectrally stable. Our proof of this fact corrects a frequently cited one given by Scott [11].     

Wettability and topography of phospholipid DPPC multilayers deposited by spin-coating on glass, silicon, and mica slides

The surface free energy of 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) layers deposited on glass, silicon, or mica by the spin-coating method was estimated. For this purpose, the advancing and receding contact angles of water, formamide, and diiodomethane were measured, and then two concepts of the interfacial interactions were applied. In the contact angle hysteresis approach, the apparent total surface free energy is calculated from the advancing and receding contact angles of the probe liquids, and in the Lifshitz-van der Waals/acid-base approach, the total surface free energy is calculated from previously determined components of the energy, that is, the apolar Lifshitz-van der Waals and the polar electron-donor and electron-acceptor, which are calculated from the advancing contact angles of the probe liquids alone. Comparison of the results obtained using these two approaches provided more information about changes in the hydrophobic/hydrophilic character of the DPPC layers and, simultaneously, a verification of the approaches. Moreover, the roughness and topography of the investigated layers were also examined by atomic force microscopy measurements. The hydrophilic character of the DPPC layers decreased if up to 0.5 mg of DPPC/mL was used to deposit on the substrates by the spin-coating method. Then it increased and leveled off if up to 2-2.5 mg of DPPC/mL was used. The changes in the energy were correlated with the changes in topography of the surfaces.     

Stereodefined dinucleoside (3′,5′)-propionamidophosphonates and β-cyanoethylphosphonates and their incorporation into modified oligonucleotides

Base-catalyzed stereospecific anti-Markovnikov addition of dinucleoside (3′,5′)-H-phosphonates to the activated alkenes acrylamide and acrylonitrile resulting in the synthesis of P-chiral diastereomerically pure dinucleoside (3′,5′)-alkylphosphonates is reported.     

Application of a renewable silver based mercury film electrode to the determination of Cr(VI) in soil samples

The design and experimental results of the application of a renewable mercury film silver based electrode to the determination of Cr(VI) in soil samples are presented. The main feature of this procedure is that it can be used in field measurements. The procedure is based on the extraction of total Cr(VI) exploiting the complexation property of diethylenetriaminepentaacetic acid (DTPA) followed by electrochemical reduction of Cr(VI) to Cr(III) with the formation of Cr(III)-H₂DTPA complex adsorbed on mercury film electrode. The voltammetric signal is caused by reduction of this complex. The validation of the proposed procedure was made by Cr(VI) determination in the certified reference material “Chromium VI in soil”. The protocol for Cr(VI) determination has also been applied to the analysis of Rendoll soil samples with satisfying precision.