Phase networks of cross-β peptide assemblies

Recent evidence suggests that simple peptides can access diverse amphiphilic phases, and that these structures underlie the robust and widely distributed assemblies implicated in nearly 40 protein misfolding diseases. Here we exploit a minimal nucleating core of the Aβ peptide of Alzheimer's disease to map its morphologically accessible phases that include stable intermolecular molten particles, fibers, twisted and helical ribbons, and nanotubes. Analyses with both fluorescence lifetime imaging microscopy (FLIM) and transmission electron microscopy provide evidence for liquid-liquid phase separations, similar to the coexisting dilute and dense protein-rich liquid phases so critical for the liquid-solid transition in protein crystallization. We show that the observed particles are critical for transitions to the more ordered cross-β peptide phases, which are prevalent in all amyloid assemblies, and identify specific conditions that arrest assembly at the phase boundaries. We have identified a size dependence of the particles in order to transition to the para-crystalline phase and a width of the cross-β assemblies that defines the transition between twisted fibers and helically coiled ribbons. These experimental results reveal an interconnected network of increasing molecularly ordered cross-β transitions, greatly extending the initial computational models for cross-β assemblies.     

Synthesis and Structure of Amido‐ and Imido(pentafluorophenyl)borane Zirconocene and Hafnocene Complexes: N?H and B?H Activation

Treatment of Me₂S ? B(C₆F₅)_nH_3?n (n=1 or 2) with ammonia yields the corresponding adducts. H₃N ? B(C₆F₅)H₂ dimerises in the solid state through N? H???H? B dihydrogen interactions. The adducts can be deprotonated to give lithium amidoboranes Li[NH₂B(C₆F₅)_nH_3?n]. Reaction of the n=2 reagent with [Cp₂ZrCl₂] leads to disubstitution, but [Cp₂Zr{NH₂B(C₆F₅)₂H}₂] is in equilibrium with the product of β‐hydride elimination [Cp₂Zr(H){NH₂B(C₆F₅)₂H}], which proves to be the major isolated solid. The analogous reaction with [Cp₂HfCl₂] gives a mixture of [Cp₂Hf{NH₂B(C₆F₅)₂H}₂] and the N? H activation product [Cp₂Hf{NHB(C₆F₅)₂H}]. [Cp₂Zr{NH₂B(C₆F₅)₂H}₂] ? PhMe and [Cp₂Hf{NH₂B(C₆F₅)₂H}₂] ? 4(thf) exhibit β‐B‐agostic chelate bonding of one of the two amidoborane ligands in the solid state. The agostic hydride is invariably coordinated to the outside of the metallocene wedge. Exceptionally, [Cp₂Hf{NH₂B(C₆F₅)₂H}₂] ? PhMe has a structure in which the two amidoborane ligands adopt an intermediate coordination mode, in which neither is definitively agostic. [Cp₂Hf{NHB(C₆F₅)₂H}] has a formally dianionic imidoborane ligand chelating through an agostic interaction, but the bond‐length distribution suggests a contribution from a zwitterionic amidoborane resonance structure. Treatment of the zwitterions [Cp₂MMe(μ‐Me)B(C₆F₅)₃] (M=Zr, Hf) with Li[NH₂B(C₆F₅)_nH_3?n] (n=2) results in [Cp₂MMe{NH₂B(C₆F₅)₂H}] complexes, for which the spectroscopic data, particularly ¹J(B,H), again suggest β‐B‐agostic interactions. The reactions proceed similarly for the structurally encumbered [Cp′′₂ZrMe(μ‐Me)B(C₆F₅)₃] precursor (Cp′′=1,3‐C₅H₃(SiMe₃)₂, n=1 or 2) to give [Cp′′₂ZrMe{NH₂B(C₆F₅)_nH_3?n}], both of which have been structurally characterised and show chelating, agostic amidoborane coordination. In contrast, the analogous hafnium chemistry leads to the recovery of [Cp′′₂HfMe₂] and the formation of Li[HB(C₆F₅)₃] through hydride abstraction.     

Solid/liquid phase diagram of the ammonium sulfate/malic acid/water system

We have studied the low temperature phase diagram and water activities of the ammonium sulfate/malic acid/water system using differential scanning calorimetry (DSC) and infrared spectroscopy (IR) of thin films. Using the results from our experiments we have mapped the ice primary phase region of the solid/liquid ternary phase diagram. In our DSC and IR experiments we observe ice nucleation in all samples and ammonium sulfate in some samples, which were cooled to 183 K. However, we only observed malic acid nucleation in IR experiments, where the sample was in contact with ZnSe windows. We also compare our results to the predictions of the Extended AIM Aerosol Thermodynamics Model (E-AIM) and find good agreement for the ice melting points in the ice primary phase field of this system; however, the E-AIM has difficulty predicting malic acid crystallization.     

ReaxFF molecular dynamics simulation of thermal stability of a Cu3(BTC)2 metal-organic framework

The thermal stability of a dehydrated Cu(3)(BTC)(2) (copper(II) benzene 1,3,5-tricarboxylate) metal-organic framework was studied by molecular dynamics simulation with a ReaxFF reactive force field. The results show that Cu(3)(BTC)(2) is thermally stable up to 565 K. When the temperature increases between 600 K and 700 K, the framework starts to partially collapse. The RDF analysis shows that the long range correlations between Cu dimers disappear, indicating the loss of the main channels of Cu(3)(BTC)(2). When the temperature is above 800 K, we find the decomposition of the Cu(3)(BTC)(2) framework. CO is the major product, and we also observe the release of CO(2), O(2), 1,3,5-benzenetricarboxylate (C(6)H(3)(CO(2))(3), BTC) and glassy carbon. The Cu dimer is stable up to 1100 K, but we find the formation of new copper oxide clusters at 1100 K. These results are consistent with experimental findings, and provide valuable information for future theoretical investigations of Cu(3)(BTC)(2) and its application in adsorption, separation and catalytic processes.     

Direct correlation between work function of indium-tin-oxide electrodes and solar cell performance influenced by ultraviolet irradiation and air exposure

We report on reversible changes of the work function (WF) values of indium-tin-oxide (ITO) under prolonged ultraviolet (UV) and air exposure. The WF of ITO is reduced from 4.7 eV to 4.2 eV by photon absorption in ITO under UV illumination or an air mass 1.5 solar simulator (100 mW cm(-2)). Air or oxygen exposure is found to increase the WF of ITO (UV-exposed) to a value of 4.6 eV. These changes of ITO's WF lead to reversible variations of the performance of organic photovoltaic devices where ITO acts primarily as the electron collecting or hole collecting electrode. These variations can be reflected in the disappearance (or appearance) of an S-shaped kink in the J-V characteristics upon continuous UV or solar simulator illumination (or air exposure). This reversible phenomenon is ascribed to the adsorption and desorption of oxygen on the surface and grain boundaries of ITO. The use of surface modifiers to either decrease or increase the WF of ITO in organic photovoltaic devices with inverted and conventional geometries is also shown to be an effective route to stabilize the device performance under UV illumination.     

Charge dynamics in solar cells with a blend of π-conjugated polymer-fullerene studied by transient photo-generated voltage

The biphasic feature of transient photo-generated voltage (TPV) is investigated in organic solar cells (OSCs) with a blend active layer of poly(3-hexylthiophene) (P3HT) and phenyl C61 butyric acid methyl ester (PCBM). The positive and negative components in biphasic TPV are explained through PCBM only and P3HT only devices. The negative and positive components are ascribed to the dipole formation at the buried interface of P3HT/indium tin oxide (ITO) and PCBM/ITO respectively. Based on these findings, two fundamental phenomena are revealed as follows: (1) interfacial modification on the buried interface inverts the negative component in biphasic TPV to a positive component, which prevents the leakage current channel in the conventional OSC structure; and (2) the solvent chosen transforms the positive component in biphasic TPV into a negative signal, which blocks the leakage current channel in the inverted OSC structure. Consequently, the study of TPV polarity provides the justification of the interaction at the buried interface. Besides, the decay of TPV is found to be bi-exponential, which can be used as a tool to estimate the degree of charge balance in OSCs.     

Gaining insight into the inhibition of glycoside hydrolase family 20 exo-β-N-acetylhexosaminidases using a structural approach

One useful methodology that has been used to give insight into how chemically synthesized inhibitors bind to enzymes and the reasons underlying their potency is crystallographic studies of inhibitor-enzyme complexes. Presented here is the X-ray structural analysis of a representative family 20 exo-β-N-acetylhexosaminidase in complex with various known classes of inhibitor of these types of enzymes, which highlights how different inhibitor classes can inhibit the same enzyme. This study will aid in the future development of inhibitors of not only exo-β-N-acetylhexosaminidases but also other types of glycoside hydrolases.     

Soybean Hulls Pretreated Using Thermo-Mechanical Extrusion—Hydrolysis Efficiency,Fermentation Inhibitors,and Ethanol Yield

Soybean hulls were subjected to thermo-mechanical extrusion pretreatment at various in-barrel moisture contents and screw speeds. Extrusion degraded the lignocellulosic structure and enhanced enzymatic hydrolysis of soybean hulls, with up to 155% increase in glucose yield as compared to untreated substrate. Greater glucose yields were observed at higher in-barrel moistures (45% and 50%) and lower screw speed (280 and 350 rpm). Maximum 74% cellulose to glucose conversion resulted from using a two-enzyme cocktail consisting of cellulase and β-glucosidase. Conversion increased to 87% when a three-enzyme cocktail having a cell wall degrading enzyme complex was used for hydrolysis. Fermentation inhibitors, such as furfural, 5-(hydroxymethyl)-2-furaldehyde (HMF), and acetic acid, were found in the extrusion pretreated soybean hulls and hydrolysate. However, their concentrations were below the known thresholds for inhibition. Fermentation of hydrolysate by Saccharomyces cerevisiae led to high yields of ethanol, with concentration ranging from 13.04 to 15.44 g/L.     

Vibrational spectroscopy as a probe of molecule-based devices

This critical review discusses the applicability of vibrational spectroscopic techniques, specifically Raman and mid-infrared, to the study of molecule-based electronics through a series of examples. We focus on a number of devices currently of interest, such as solar cells, organic light emitting diodes, molecular junctions, switches and transistors. Infrared and Raman spectroscopic techniques and their variations, the main focus of this article, can be used to investigate properties such as crystallinity, multiphasic distributions in three dimensions, as well as lifetimes, structures and energetics of excited-states on ultrashort to very long timescales (210 references).     

Major Distinctions in the Molecular and Supramolecular Structures of Selenium‐containing Organotins, (o‐MeSe‐C6H4CH2)SnPh3–nCln (n = 0, 1, 2)

The synthesis and characterization of selenium‐containing stannanes, (o‐MeSeC₆H₄CH₂)Sn(Ph)_3–nCl_n [n = 0 ( 1Se ); 1 ( 2Se ); 2 ( 3Se )], is presented. The increasing Lewis acidity at tin in the series 1Se → 2Se → 3Se is reflected in their respective solid state arrangements and supramolecular architecture by interactions of the type Se ··· Se, Sn ··· Se, and Cl ··· H–C. Overall the capacity of the selenium atom to form bidentate interactions creates geometric assemblies distinctly different to those of the oxygen and sulfur analogs.