A shock tube study of the OH + OH → H2O + O reaction

The rate coefficient for the reaction has been determined in mixtures of nitric acid (HNO₃) and argon in incident shock wave experiments. Quantitative OH time-histories were obtained by cw narrow-linewidth uv laser absorption of the R₁(5) line of the A² σ⁺ ← X² Π_i (0,0) transition at 32606.56 cm^?1 (vacuum). The experiments were conducted over the temperature range 1050–2380 K and the pressure range 0.18–0.60 atm. The second-order rate coefficient was determined to be with overall uncertainties of +11%, ?16% at high temperatures and +25%, ?22% at low temperatures. By incorporating data from previous investigations in the temperature range 298–578 K, the following expression is determined for the temperature range 298–2380 K © 1994 John Wiley & Sons, Inc.     

Capture-ROMP-release: application to the synthesis of amines and alkyl hydrazines

Application of a capture-ROMP-release strategy for the chromatography-free purification of Mitsunobu reaction products is described. Norbornenyl-tagged reagents are utilized for standard solution phase Mitsunobu chemistry. Post-reaction phase-switching is accomplished via in situ ring-opening metathesis polymerization (ROMP) followed by precipitation of the polymer with methanol. Release of the product from the polymer affords amines and alkyl hydrazine derivatives with good yields and purities.     

New zinc phosphates decorated by imidazole-containing ligands

Four new zinc phosphates [Zn(HPO4)(C6H9N3O2)] (1), [Zn(HPO4)(C4H6N2)].H2O (2), [Zn2(HPO4)2(C14H14N4)].2H2O (3), and [Zn(HPO4)(C14H14N4)] (4) were synthesized in the presence of d-histidine, 1-methylimidazole, 1,4-bis(imidazol-1-ylmethyl)benzene (L1), and 1,2-bis(imidazol-1-ylmethyl)benzene (L2), respectively, and their structures were determined by X-ray crystallography. The inorganic framework of compounds 1, 2, and 3 is composed of vertex-shared ZnO3N and HPO4 tetrahedra that form four rings, which, in turn, are linked to generate a one-dimensional ladder structure. In 1 and 2 the organic groups (monoimidazole ligand) are located at each side of the ladders, while in 3 the bisimidazole ligand, 1,4-bis(imidazol-1-ylmethyl)benzene, links the ladders together to form a novel 2D structure. Compound 1 is the first zinc phosphate framework to be templated by an N-bonded chiral amino acid. In 4 the zero-dimensional four rings are joined together by the linear bridging ligand, 1,2-bis(imidazol-1-ylmethyl)benzene, to generate a one-dimensional framework with a new face-to-face structural motif. The 3D structure of compound 4 is stabilized by hydrogen-bonding, pi-pi interactions, and C-H...pi interactions. The approach of incorporating multifunctional ligands into zinc phosphate frameworks and linking the inorganic zinc phosphates subunits by an organic ligand provides opportunities for the design of new inorganic-organic open frameworks.     

Utility of three types of mass spectrometers for determining elemental compositions of ions formed from chromatographically separated compounds

Concentration factors of 1000 and more reveal dozens of compounds in extracts of water supplies. Library mass spectra for most of these compounds are not available, and alternative means of identification are needed. Determination of the elemental compositions of the ions in mass spectra makes feasible searches of commercial and chemical literature that often lead to compound identification. Instrumental capabilities that constrain the utility of a mass spectrometer for determining ion compositions for compounds that elute from a chromatographic column are scan speed, mass accuracy, linear dynamic range, and resolving power. Mass peak profiling from selected ion recording data (MPPSIRD) performed with a double-focusing mass spectrometer provides the best combination of these capabilities. This technique provides unique ion compositions for ions of higher mass from compounds eluting from a gas chromatograph than can be obtained by orthogonal acceleration time-of-flight (oa-TOF) or Fourier transform ion cyclotron resonance mass spectrometry. Multiple compositions are usually possible for an ion with a mass exceeding 150 Da within the error limits of the mass measurement. The correct composition is selected based on measured exact masses of the mass peak profiles resulting from isotopic ions higher in mass by 1 and 2 Da and accurate measurement of the summed abundances of these isotopic ions relative to the monoisotopic ion. A profile generation model (PGM) automatically determines which compositions are consistent with measured exact masses and relative abundances. The utility of oa-TOF and double-focusing mass spectrometry using ion composition elucidation (MPPSIRD plus the PGM) are considered for determining ion compositions of two compounds found in drinking water extracts and a third compound from a monitoring well at a landfill. Published in 2002 by John Wiley & Sons, Ltd.     

Efforts to expand the genetic alphabet: identification of a replicable unnatural DNA self-pair

Six unnatural nucleotides featuring fluorine-substituted phenyl nucleobase analogues have been synthesized, incorporated into DNA, and characterized in terms of the structure and replication properties of the self-pairs they form. Each unnatural self-pair is accommodated in B-form DNA without detectable structural perturbation, and all are thermally stable and selective to roughly the same degree. Furthermore, the efficiency of polymerase-mediated mispair synthesis is similar for each unnatural nucleotide in the template. In contrast, the efficiency of polymerase-mediated self-pair extension is highly dependent on the specific fluorine substitution pattern. The most promising unnatural base pair candidate of this series is the 3-fluorobenzene self-pair, which is replicated with reasonable efficiency and selectivity.     

Potential Mechanisms of Photodynamic Inactivation of Virus by Methylene BlueI. RNA–Protein Crosslinks and Other Oxidative Lesions in Qβ Bacteriophage

A spectrum of oxidative lesions was observed in a bacteriophage-based model system that is very sensitive to the photodynamic activity of selected dyes. When suspensions of the intact bacteriophage Qβ were exposed to methylene blue plus light (MB+L), inactivating events, or "hits" occurred that were oxygen-dependent and that were associated with the formation of several specific lesions: (1) carbonyl moieties on proteins, (2) 8-oxo-7,8-dihydroguanine (8-oxoGua), and (3) single-strand breaks (ssb) in the RNA genome and (4) RNA-protein crosslinks. Formation of carbonyl groups associated with protein in the Qβ phage preparation correlated positively with photoinactivation of the phage with increasing doses of either of the sensitizers MB or rose bengal. Strand breaks in the Qβ genomic RNA were observable at high MB concentrations but appeared not to be significant at the lower concentrations of MB, as full-length Qβ RNA was observable well beyond the 99% inactivation point in MB dosage. It was shown that the number of 8-oxoGua lesions were unlikely to be sufficient to account for the number of lethal events. Following exposure to MB+L, crosslink formation between Qβ RNA and protein was observed by virtue of the location of RNA at the interface of phenol-aqueous extractions of phage suspensions. A significant increase over background of RNA-protein complexes (including full-length Qβ RNA) was observed at the lowest concentration of MB tested (0.5 μ M ), which corresponded roughly to an average of 2 lethal hits per phage or approximately 13% survival compared to the zero MB control (100% survival). Due to its close correlation with Qβ inactivation and its expected lethality, RNA-protein crosslink formation may be important as an inactivating lesion in bacteriophage Qβ following MB+L exposure.     

A shock tube study of H + HNCO → NH2 + CO

The reaction of atomic hydrogen with isocyanic acid (HNCO) to produce the amidogen radical (NH₂) and carbon monoxide, has been studied in shock-heated mixtures of HNCO dilute in argon. Time-histories of the ground-state NH₂ radical were measured behind reflected shock waves using cw, narrowlinewidth laser absorption at 597 nm, and HNCO time-histories were measured using infrared emission from the fundamental v₂-band of HNCO near 5 μm. The second-order rate coefficient of reaction (2(a)) was determined to be: cm³ mol^?1 s^?1, where f and F define the lower and upper uncertainty limits, respectively. An upper limit on the rate coefficient of was determined to be: