Formation of π-coupled organic wire on the Si(0 0 1)[2 × 1] surface

The stability and electronic properties of highly packed 1-hexyl-naphthalene (HNap) molecular wire on Si(0 0 1) have been studied with first principles DFT method. HNap assembles into a 1D arrangement on the Si(0 0 1)[2 × 1] surface on which molcules adopt a commensurate structure along a dimer row with an intermolecular distance of 3.8 Å. HNap is attached to the surface through the hexyl chain, and stands normal to the surface. This highly packed structure leads to the formation of delocalized π-orbitals over the entire wire but essentially localized on the naphthalene counterpart, and well separated from the Si surface states. Cohesion energy within the wire arises from a significant attraction between hexyl chains, and to a weaker stabilizing π–π interaction between naphthalenes.     

Discrimination between ethanol inhibition models in a continuous alcoholic fermentation process using flocculating yeast

Discrimination between different rival models for describing the inhibitory effect of ethanol both on yeast growth and on fermentation was studied for a continuous process of alcoholic fermentation in a tower reactor with recycling of flocculating cells. Models tested include linear, parabolic, hyperbolic, exponential, and generalized nonlinear power-law types. The best expressions were identified under the criteria that all the kinetic parameters should assume acceptable values in a feasible range and should result in the best fit of the experimental data. The kinetic parameters were estimated from steady-state data of several sugar concentrations in feeding stream (S₀ = 160, 170, 180, 190, 200 g/L), constant dilution rate (D = 0.2 h^-1), recycle ratio (α = 13.6), and temperature (T = 30°C). The best model for the yeast growth was of power-law type, whereas for the product formation the best model was of linear type. These models were able to reproduce the trends of the process variables satisfactorily.     

A new perspective on beta-sheet structures using vibrational Raman optical activity: from poly(L-lysine) to the prion protein

The vibrational Raman optical activity (ROA) spectrum of a polypeptide in a model beta-sheet conformation, that of poly(l-lysine), was measured for the first time, and the alpha-helix --> beta-sheet transition monitored as a function of temperature in H(2)O and D(2)O. Although no significant population of a disordered backbone state was detected at intermediate temperatures, some side chain bands not present in either the alpha-helix or beta-sheet state were observed. The observation of ROA bands in the extended amide III region assigned to beta-turns suggests that, under our experimental conditions, beta-sheet poly(L-lysine) contains up-and-down antiparallel beta-sheets based on the hairpin motif. The ROA spectrum of beta-sheet poly(L-lysine) was compared with ROA data on a number of native proteins containing different types of beta-sheet. Amide I and amide II ROA band patterns observed in beta-sheet poly(L-lysine) are different from those observed in typical beta-sheet proteins and may be characteristic of an extended flat multistranded beta-sheet, which is unlike the more irregular and twisted beta-sheet found in most proteins. However, a reduced isoform of the truncated ovine prion protein PrP(94-233) that is rich in beta-sheet shows amide I and amide II ROA bands similar to those of beta-sheet poly(L-lysine), which suggests that the C-terminal domain of the prion protein is able to support unusually flat beta-sheets. A principal component analysis (PCA) that identifies protein structural types from ROA band patterns provides a useful representation of the structural relationships among the polypeptide and protein states considered in the study.     

The Pesticide 3-(3,4-Dichlorophenyl)-1,1-dimethylurea (Diuron) Immobilized on Silica Gel Surface

A route for 3-(3,4-dichlorophenyl)-1,1-dimethylurea (diuron) immobilization on silica gel was established after reacting at the first stage the precursor silylant agent 3-trimethoxysilylpropylamine to the support. The pesticide was covalently bonded to available amine groups of the precursor, giving 1.03 mmol of amine per gram of silica. Infrared, (13)C, and (29)Si NMR spectra are in agreement with the proposed reaction between nitrogen of the amine group of the previously anchored silica to carbon on the para-position of the aromatic ring of the pesticide. The immobilization is clearly affected by the presence or absence of disprotonating agent, to give 12.50 and 68.40% reaction yield, respectively; these results were confirmed through elemental analysis. Copyright 2001 Academic Press.     

Molecular dynamics in the smectic a and C phases in a long-chain ferroelectric liquid crystal: 2H NMR, dielectric properties, and a theoretical treatment

In this work, the rotational-diffusion coefficients D(parallel) and D(perpendicular) for the ferroelectric smectogen (+)-(S)-4-[4'-(1-methylheptyloxy)] biphenyl 4-(10-undecenyloxy)benzoate have been studied by means of 2H NMR spectroscopy in the smectic C phase, using a new theoretical approach (Domenici,V.; Geppi, M.; Veracini, C. A. Chem. Phys. Lett. 2003, 382, 518). The analysis of spin-lattice relaxation times has been performed in terms of the diffusional constant and the activation energy of the internal and overall molecular-reorientational motions, and the results are compared to the smectic A (SmA) phase. Moreover, from the 2H NMR data in the SmA phase, the dielectric permittivity and the dielectric relaxation time functions are investigated using a theoretical approach. The longitudinal and transverse components of the real Rchigammaomega and imaginary chigammaomega (gamma = parallel, perpendicular) parts of the complex susceptibility tensor and the nematic-like rotational-viscosity coefficients, lambda2 and lambda5, are calculated.     

The role of rotation in the vibrational relaxation of water by hydrogen molecules

Vibrational relaxation cross sections of the H(2)O(upsilon(2) = 1) bending mode by H(2) molecules are calculated on a recent high-accuracy ab initio potential-energy surface using quasiclassical trajectory calculations. The role of molecular rotation is investigated at a collisional energy of 3500 cm(-1) and it is shown that initial rotational excitation significantly enhances the total (rotationally summed) vibrational relaxation cross sections. A strong and complex dependence on the orientation of the water angular momentum is also observed, suggesting the key role played by the asymmetry of water. Despite the intrinsic limitations of classical mechanics, these exploratory results suggest that quantum approximations based on a complete decoupling of rotation and vibration, such as the widely used vibrational close-coupling (rotational) infinite-order-sudden method, would significantly underestimate rovibrationally inelastic cross sections. We also present some rationale for the absence of dynamical chaos in the scattering process.     

Comparative monte Carlo study of ising spin glasses in two to five dimensions

Monte Carlo simulations of the Edwards-Anderson-Ising spin glass with Gaussian distribution of nearest-neighbor exchange forces in four and five dimensions are performed to check the speculation thatd=4 is the lower critical dimensionality. In contrast to this expectation we find no qualitative difference at all to the results in two and three dimensions. We still find that on not too long time-scales there is an apparently rather well defined freezing temperatureT _f , where the susceptibility has a cusp, and belowT _f nonzero order parametersq, can be found as ford=2, 3. But even ford=5 the decay of the Edwards-Anderson order parameter belowT _f is found to be consistent with a logarithmic variation over several decades of observation time. The possible interpretations of this result are discussed. Our data thus suggest that either there is no equilibrium phase transition in all these dimensions, or more likely that a phase transition exists for 2d5 but the properties of the ordered phase may be rather peculiar.Sonderforschungsbereich 125 Aachen-Jülich-Köln     

Radius,perimeter, and density profile for percolation clusters and lattice animals

Monte Carlo simulation and series expansion shows the radius of gyration of large clusters withs sites each to vary ass with0.56 in two and0.47 in three dimensions at the percolation threshold, and with(d=2)0.65 and(d=3)0.53 for random lattice animals (zero concentration). Clusters up tos=100 were used. The perimeter of random animals approaches 2.8s for larges on the simple cubic lattice. Monte Carlo simulation of the Eden process (growing animals) up tos=5,000 indicates a systematic variation of about ±0.05 for the effective exponent=(s) and thus suggests that the true asymptotic exponents may be compatible with the predictions of hyper-scaling.     

Exact distribution of cluster size and perimeter for two-dimensional percolation

Exact series expansion data of Sykes et al. are used to calculate the average numberc _n and perimeters _n of clusters of sizen20 in the site percolation problem for the triangular, square, and honeycomb lattice. At the percolation thresholdp _n we find a sharply peaked distribution of perimeterss _n with mean s _n =((1–p _n )/p _c )n+O(n ) and width s _n ² –S _n ²n ^1.6 where1/=0.39. This perimeter s _n should not be interpreted as a cluster surface in the usual sense. Two tests confirm the universality hypothesis with reasonable accuracy. The asymptotic decay of the cluster numbersc _n withn is consistent with the postulated asymmetry aboutp _c : logc _n –n forn with1 forp<p _c and1/2 forp>p _c .