Well‐defined amphiphilic polymethylene‐b‐poly(acrylic acid) diblock copolymers: New synthetic strategy and their self‐assembly

Well‐defined amphiphilic polymethylene‐b‐poly (acrylicacid) diblock copolymers have been synthesized via a new strategy combining polyhomologation and atom transfer radical polymerization (ATRP). Hydroxyl‐terminated polymethylenes (PM‐OH) with different molecular weights and narrow molecular weight distribution are obtained through the polyhomologation of dimethylsulfoxonium methylides following quantitative oxidation via trimethylamine‐N‐oxide dihydrate. Subsequently, polymethylene‐based macroinitiators (PM‐MIs M_n = 1,300 g mol^?1 [M_w/M_n = 1.11] and M_n = 3,300 g mol^?1 [M_w/M_n = 1.04]) are synthesized by transformation of terminal hydroxyl group of PM‐OH to α‐haloester in ～100% conversion. ATRPs of tert‐butyl acrylate (t‐BuA) are then carried out using PM‐MIs as initiator to construct PM‐b‐P(t‐BuA) diblock copolymers with controllable molecular weight (M_n = 8,800–15,800 g mol^?1 M_w/M_n = 1.04–1.09) and different weight ratio of PM/P(t‐BuA) segment (1:1.7–1:11.2). The amphiphilic PM‐b‐PAA diblock copolymers are finally prepared by hydrolysis of PM‐b‐P(t‐BuA) copolymers and their self‐assembly behavior in water is preliminarily investigated via the determination of critical micelle concentrations, dynamic light scattering, and transmission electron microscope (TEM). © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Extended hybrid pressure and velocity boundary conditions for D3Q27 lattice Boltzmann model

The extended hybrid electronic-ionic, thermal, magnetic, electric and force couple fields pressure and velocity boundary conditions for D3Q27 lattice Boltzmann model is established. Then, the closed-form solutions of extended distribution functions are derived. Last, the Fukushima nuclear plant Cesium-137 penetration case is discussed.     

Determination of sparstolonin B by ultra‐high performance liquid chromatography coupled with triple quadrupole mass spectrometry: application to pharmacokinetic study of sparstolonin B in rat plasma

Sparstolonin B (SsnB), a spontaneous isocoumarin compound isolated from the tuber of Scirpus yagara Ohwi. (Cyperaceae), possesses potent anti‐inflammatory and antitumor activity. In the present study, a rapid and simple UHPLC/MS/MS method for determination of SsnB in rat plasma was developed and validated. Plasma samples were pretreated by liquid–liquid extraction with ethyl acetate containing rhein as an internal standard and separated on a C₁₈ column at 35 °C, with a gradient mobile phase consisting of acetonitrile and water containing 0.2% (v/v) formic acid within 2.1 min. MS/MS detection was accomplished in multiple reaction monitoring mode with negative electrospray ionization. The precursor–product ion transitions were m/z 266.9 [M–H]^? → m/z 211.0 for SsnB and m/z 283.2 [M–H]^? → m/z 239.0 for IS. The intra‐ and inter‐day precision (RSD) was <8.98% and the accuracy (RE) ranged from ?7.40 to 4.50%. The extraction recoveries ranged from 96.28 to 97.30%. The pharmacokinetic parameters were calculated using Win Nonlin53 software. The absolute bioavailability of SsnB was estimated to be 6.98%. The proposed method was successfully applied to a pharmacokinetic study of SsnB in rats after intravenous administration with a dose of 0.5 mg/kg and oral administration at a dose of 5 mg/kg. Copyright © 2015 John Wiley & Sons, Ltd.     

Peptidic molecular brushes with enhanced chirality

Tethering oligopeptides through one end densely packed onto a linear polymer main chain will greatly reduce freedom of the peptide chains, which affords an easy access to investigate the secondary structure of peptides under constrained condition. Herein, molecular brushes with densely grafted monodispersed Cbz‐protected oligolysine were efficiently synthesized via free radical polymerization of the macromonomer‐bearing lysine octamer, and the secondary structures of the oligopeptide side chains in solutions were investigated. To examine the architecture effects on helical conformation, circular dichroism spectra from the polymer were compared with that from the corresponding macromonomer. To check the chemical structural effects on conformation of the oligopeptide, Cbz groups from the molecular brushes were deprotected, and the secondary structures of the polymers were compared before and after the deprotection. Conformation of the deprotected polymer was further explored by varying solution pH values. Complexation of the positively charged, deprotected polymer with anionic surfactant provides an alternative route to mediate the secondary structures of the short peptides in the constrained environment. It has been found that oligolysine side chains within the molecular brushes can adopt enhanced α‐helical conformation through the crowding structures or can form β‐sheet by hydrophobic interactions between the complexed surfactants. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Construction and Evaluation of Merged Pharmacophore Based on Peroxisome Proliferator Receptor-Alpha Agonists

Pharmacophore is a commonly used method for molecular simulation, including ligand-based pharmacophore (LBP) and structure-based pharmacophore (SBP). LBP can be utilized to identify active compounds usual with lower accuracy, and SBP is able to use for distinguishing active compounds from inactive compounds with frequently higher missing rates. Merged pharmacophore (MP) is presented to integrate advantages and avoid shortcomings of LBP and SBP. In this work, LBP and SBP models were constructed for the study of peroxisome proliferator receptor-alpha (PPARα) agonists. According to the comparison of the two types of pharmacophore models, mainly and secondarily pharmacological features were identified. The weight and tolerance values of these pharmacological features were adjusted to construct MP models by single-factor explorations and orthogonal experimental design based on SBP model. Then, the reliability and screening efficiency of the best MP model were validated by three databases. The best MP model was utilized to compute PPARα activity of compounds from traditional Chinese medicine. The screening efficiency of MP model outperformed individual LBP or SBP model for PPARα agonists, and was similar to combinatorial screening of LBP and SBP. However, MP model might have an advantage over the combination of LBP and SBP in evaluating the activity of compounds and avoiding the inconsistent prediction of LBP and SBP, which would be beneficial to guide drug design and optimization.     

Analytical derivative techniques for TDDFT excited-state properties: Theory and application

We review our recent work on the methodology development of the excited-state properties for the molecules in vacuum and liquid solution.The general algorithms of analytical energy derivatives for the specific properties such as the first and second geometrical derivatives and IR/Raman intensities are demonstrated in the framework of the time-dependent density functional theory(TDDFT).The performance of the analytical approaches on the calculation of excited-state energy Hessian has also been shown.It is found that the analytical approaches are superior to the finite-difference method on the computational accuracy and efficiency.The computational cost for a TDDFT excited-state Hessian calculation is only 2–3 times as that for the DFT ground-state Hessian calculation.With the low computational complexity of the developed analytical approaches,it becomes feasible to realize the large-scale numerical calculations on the excited-state vibrational frequencies,vibrational spectroscopies and the electronic-structure parameters which enter the spectrum calculations of electronic absorption and emission,and resonance Raman spectroscopies for medium-to large-sized systems.