Mapping of possible prion protein self-interaction domains using peptide arrays

Background  

The common event in transmissible spongiform encephalopathies (TSEs) or prion diseases is the conversion of host-encoded protease sensitive cellular prion protein (PrP^C) into strain dependent isoforms of scrapie associated protease resistant isoform (PrP^Sc) of prion protein (PrP). These processes are determined by similarities as well as strain dependent variations in the PrP structure. Selective self-interaction between PrP molecules is the most probable basis for initiation of these processes, potentially influenced by chaperone molecules, however the mechanisms behind these processes are far from understood. We previously determined that polymorphisms do not affect initial PrP^C to PrP^Sc binding but rather modulate a subsequent step in the conversion process. Determining possible sites of self-interaction could elucidate which amino acid(s) or amino acid sequences contribute to binding and further conversion into other isoforms. To this end, ovine – and bovine PrP peptide-arrays consisting of 15-mer overlapping peptides were probed with recombinant sheep PrP^C fused to maltose binding protein (MBP-PrP).     

Synthesis and characterization of Mn-, La-Mn- and La-Ca-Mn-citrates as precursors for LaMnO<Subscript>3</Subscript> and La<Subscript>1−x</Subscript>Ca<Subscript>x</Subscript>MnO<Subscript>3</Subscript>

Mn-, LaMn- and LaCaMn-citrates were synthesized at 60–120°C in ethylene glycol medium using chlorides or nitrates as metal sources. Their composition, IR spectra and thermal decomposition were studied. Equimolar La/Mn ratio has been established in the complex, prepared from chloride solution with the same initial composition of the metals. In the isolated three-metallic complex the molar ratio of the metals deviates from the composition in the initial solution. The final products of the heating of Mn- and mixed-metal LaMn-citrates at 1000°C are phase-homogeneous Mn₃O₄ (hausmannite) and LaMnO₃ respectively. Parasitic phase(s) are observed in La_xCa_1−xMn_yO₃, produced from LaCaMn-citrate.     

A new dimension in thermal analysis

Summary An enormous development has taken place within the last five years in synchronous teaching over the Internet, i.e. both the teacher and the students are simultaneously in direct communication with each other as in a normal class-room or auditorium. With this concept it is possible to communicate orally, to exchange Power Point Presentations, documents, programmes and live web-camera pictures. It is even possible to use an electronic black board on which both the teacher and the students can work simultaneously. The great advantage with this type of teaching is that it is not restricted to a single class-room/auditorium with limited access, but in a virtual room accessible to everybody in principle all over the world, and which certainly open up new possibilities in teaching. The purpose of this paper is to present and to discuss the concept of virtual class-room teaching, how the system operates in practice, its advantages and, finally, how its inherent limitations can be overcome.     

Cyanide attack at low-spin iron(II)–diimine complexes: the structure of a cyanide-containing derivative of a leaving ligand

The isolation and structural characterisation of the product of addition of HCN to the Schiff base derived from phenyl 2-pyridyl ketone and 3,4-dimethylaniline (Me2bsb) provides evidence in favour of a mechanism involving nucleophilic attack at the coordinated ligand for reaction of the complex [Fe(Me₂bsb)₃]²⁺ with cyanide.     

Large-volume stacking in capillary electrophoresis using pH hysteresis of the electroosmotic flow in a bare fused-silica capillary

For large-volume stacking with the electroosmotic flow pump (LVSEP) in capillary electrophoresis of anionic analytes it is required that the electroosmotic mobility (EOM) should be smaller than the magnitudes of the effective mobilities of the analytes. When a fused-silica capillary is treated with an acidic solution, the silanoate group on the silica surface is neutralized to silanol and the EOM is suppressed. Due to the slow deprotonation equilibrium of the silanol group at an intermediate pH, this reduced EOM can be retained during a number of electrophoresis runs. Using a bare fused-silica capillary preconditioned with 0.01 M HCl, successful LVSEP at pH 6.0 was achieved for weakly acidic compounds with two orders of magnitude enhancements in the concentration sensitivity. The repeatability in migration times of ten analytes stacked by LVSEP in a single day was excellent with the relative standard deviation (RSD) less than 1% (n = 6). The day-to-day repeatability was also excellent with RSD less than 3% (n = 3 x 6) when the capillary was preconditioned each day.     

Low-temperature suspension polymerization of vinyl pivalate for the preparation of syndiotacticity-rich ultrahigh molecular weight poly(vinyl alcohol) microfibrils with high yield

To prepare ultrahigh molecular weight (UHMW) poly(vinyl pivalate) (PVPi) with high conversion and high linearity for a precursor of syndiotacticity-rich UHMW poly(vinyl alcohol) (PVA), vinyl pivalate (VPi) was suspension polymerized using a low-temperature initiator, 2,2'-azobis(2,4-dimethylvaleronitrile) (ADMVN), and the effects of polymerization conditions on the polymerization behavior and molecular structures of PVPi and PVA prepared by saponifying PVPi were investigated. Suspension polymerization was slightly inferior to bulk polymerization in increasing the molecular weight of PVA. In contrast, the former was superior in increasing the conversion of the polymer. Suspension polymerization of VPi at 25 °C by controlling various polymerization factors proved to be successful in obtaining PVA of UHMW (number-average degree of polymerization (P_n): 14,700-16,700), high syndiotactic diad content (62%), and of high yield (ultimate conversion of VPi into PVPi: 85-90%). In the case of bulk polymerization of VPi under the same conditions, maximum P_n, conversion of 15,800-17,000, and 25-35% were obtained, respectively. The degree of branching was lower and the P_n and syndiotacticity were higher with PVA prepared from PVPi polymerized at lower temperatures. All PVAs from PVPi suspension-polymerized at 25 °C were fibrous, with a high degree of crystallinity and orientation of the crystallites.     

Structural determination of hexadecanoic lysophosphatidylcholine regioisomers by fast atom bombardment tandem mass spectrometry

The structural determination of sn-1 and sn-2 hexadecanoic lysophosphatidylcholine (LPC) regioisomers was carried out using fast atom bombardment tandem mass spectrometry (FAB-MS/MS). The collision-induced dissociation (CID) of protonated and sodiated molecules produced diverse product ions due mainly to charge remote fragmentations. Based on the information obtained from the CID spectra of protonated and sodiated molecules, sn-1 and sn-2 hexadecanoic LPC isomers could be discriminated. Especially, the abundance ratio of the diagnostic ion pair [m/z 224/226] in the CID spectra of [M + H](+) ions was shown to be greatly different. Moreover, the CID-MS/MS spectra of sodium-adducted molecules for hexadecanoic LPC isomers showed characteristic product ions such as [M + Na - 103](+), [M + Na - 85](+), and [M + Na - 59](+), by which their regio-specificity can be differentiated.     

STUDY ON METHANOLYSIS STABILITY OF OPTICALLY ACTIVE COPOLYMERS OF TRIPHENYLMETHYL METHACRYLATE AND METHYL METHACRYLATE

The methanolysis of poly(triphenylmethyl methacrylate) (PTrMA) and its copoly-mers P(TrMA-co-MMA), P(TrMA-b-MMA) has been studied in the presence of anhydrousmethanol at 40℃ by electroconductometric method. It has been found that the methanoly-sis stability can be obviously improved for the copolymer, especially, the radom copolymer,P(TrMA-co-MMA).     

Electronic structures of dihedral (D5h, D5d, D6h, D6d) fullerenes

By means of our proposed method for Hückel theory calculation, we have calculated the electronic structures of dihedral (D_5h, D_5d, D_6h, D_6d) fullerences, which are generated from icosahedral C₂₀, C₆₀, C₈₀, C₁₈₀, C₂₄₀ and C₅₄₀, respectively. From the calculated results of 1224 fullerence molecules, certain rules on the stability and chemical reactivity have been drawn for such types of dihedral fullerenes.     

Proteomic analysis of colonic crypts from normal, multiple intestinal neoplasia and p53-null mice: a comparison with colonic polyps

In order to observe cellular changes caused by mutation of the tumor suppressors, APC and p53, we have generated protein expression profiles of mouse colon epithelial cells using two-dimensional electrophoresis (2-DE). Crypts, polyps and stroma were isolated from normal, multiple intestinal neoplasia (MIN) and p53-null mice, each with a C57Black/6J background, and subjected to 2-DE in two separate pH ranges (pH 3-10 and pH 6-11). No significant differences in protein expression patterns were observed between the normal, MIN and p53-null colon epithelial crypts. However, 64 proteins from the MIN polyps showed a 2-fold or greater difference in intensity that was statistically significant as assessed by the Wilcoxon rank-sum test (p < or = 0.05). Of these, calreticulin, carbonic anhydrase I and a new member of the glutathione-S-transferase theta family of proteins have so far been identified using an in-gel digestion protocol coupled with reversed-phase high performance liquid chromatography (RP-HPLC) ion-trap mass spectrometry. In addition, 38 marker proteins have been identified in a continuing effort to generate a comprehensive 2-DE database of proteins expressed by mouse colon epithelial cells (these databases are available at http://www.ludwig.edu.au/jpsl/jpslhome. html).