A quantum mechanical strategy to investigate the structure of liquids: the cases of acetonitrile, formamide, and their mixture

A computational strategy based on quantum mechanical (QM) calculations and continuum solvation models is used to investigate the structure of liquids (either neat liquids or mixtures). The strategy is based on the comparison of calculated and experimental spectroscopic properties (IR-Raman vibrational frequencies and Raman intensities). In particular, neat formamide, neat acetonitrile, and their equimolar mixture are studied comparing isolated and solvated clusters of different nature and size. In all cases, the study seems to indicate that liquids, even when strongly associated, can be effectively modeled in terms of a shell-like system in which clusters of strongly interacting molecules (the microenvironments) are solvated by a polarizable macroenvironment represented by the rest of the molecules. Only taking into proper account both these effects can a correct picture of the liquid structure be achieved.     

How to model solvent effects on molecular properties using quantum chemistry? Insights from polarizable discrete or continuum solvation models

We present a comparative study of solvent effects on the 15N NMR shielding constants and the lowest electronic excitation energy (n --> pi*) in the three diazines (pyrazine, pyrimidine, and pyridazine) in aqueous solution. This solvent is modeled using either a polarizable continuum model (PCM) or a discrete polarizable model (DPM). We analyze the results obtained with the two models in terms of differences/similarities in the reaction field produced at the solute. The PCM reaction field is found to be quite sensitive to the dimension of the cavity and so are the molecular properties. However, constructing the cavity so that the DPM and PCM reaction fields become similar in magnitude leads to quite similar results for the studied molecular properties modeling the solvent using either the PCM or the DPM. Compared to experimental data, the most accurate predicted results are obtained by describing the closest water molecules at the same level of sophistication as that of the solute, whereas the bulk solvent may be described using either PCM or MM. Finally, a comparison with geometry-optimized clusters seems to show that it is important to check potential deficiencies in the force field in order for this to treat hydrogen bonding in a consistent manner.     

Embedding effects on charge-transport parameters in molecular organic materials

We present a generalized version of the tight-binding approach to determine the electronic coupling parameter in charge (hole) transport phenomena in organic materials. The main novelty of this approach is that the "embedding effects" of the environment (either a solvent or a crystal packing) can be explicitly included in the calculation by considering an embedded dimer. One of the main features shown by the application of the method to both model systems and oligoacene crystals is that the routinely used "energy splitting in a dimer" approximation gives reasonable results even if the transfer units are not equivalent by symmetry but the embedding effects are properly taken into account.     

Towards a molecular scale interpretation of excitation energy transfer in solvated bichromophoric systems. II. The through-bond contribution

In this paper we present a quantum-mechanical investigation on the mechanisms which promote intramolecular EET coupling. This investigation is done by using a new computational strategy in which we combine a configuration-interaction and a linear response approach. The combined use of these two methods allows a direct identification and a quantification of both "direct" (coulomb and exchange) and through-bond (superexchange and charge-transfer) contributions. In addition, solvent effects are introduced using the polarizable continuum model. The method is applied to a family of naphthalene-bridge-naphthalene and naphthalene-bridge-anthracene systems, and the results obtained are compared with experiments. The results found suggest that the through-bond charge-transfer effects are not significant when the EET goes through permitted excitations on distant chromophores (see DN4 and DN6) while they become as important as (or even more important than) the covalent terms for EETs involving weakly allowed excitations (see A6N). By contrast, the presence of a very short bridge (in DN2) allows a very efficient delocalization of the excitation energy which is also largely modified by the presence of a solvent.     

A new contribution to periodic competition systems with delays

A delayed competition system of Lotka–Volterra type, with periodic coefficients, is considered. The topics of existence and global asymptotic stability of a periodic solution are investigated. The novelty of our results consists in the fact that they require only average conditions. In the study of global attractivity an unusual Lyapunov function is introduced. Our method takes advantage of the fact that there is no deviating argument in the negative feedback terms.     

Thorough small‐angle X‐ray scattering analysis of the instability of liquid micro‐jets in air

Liquid jets are of interest, both for their industrial relevance and for scientific applications (more important, in particular for X‐rays, after the advent of free‐electron lasers that require liquid jets as sample carrier). Instability mechanisms have been described theoretically and by numerical simulation, but confirmed by few experimental techniques. In fact, these are mainly based on cameras, which is limited by the imaging resolution, and on light scattering, which is hindered by absorption, reflection, Mie scattering and multiple scattering due to complex air/liquid interfaces during jet break‐up. In this communication it is demonstrated that synchrotron small‐angle X‐ray scattering (SAXS) can give quantitative information on liquid jet dynamics at the nanoscale, by detecting time‐dependent morphology and break‐up length. Jets ejected from circular tubes of different diameters (100–450 µm) and speeds (0.7–21 m s^?1) have been explored to cover the Rayleigh and first wind‐induced regimes. Various solvents (water, ethanol, 2‐propanol) and their mixtures have been examined. The determination of the liquid jet behaviour becomes essential, as it provides background data in subsequent studies of chemical and biological reactions using SAXS or X‐ray diffraction based on synchrotron radiation and free‐electron lasers.     

DFT/TDDFT investigation of the stepwise deprotonation in tetracycline: pK<Subscript>a</Subscript> assignment and UV–vis spectroscopy

Tetracyclines are a class of derivatives of polycyclic naphthacene carboxamide, which have attracted wide interest in the pharmaceutical field for their use as antibiotics. These molecules are characterized by a substantial conformational flexibility and by the presence of different binding sites which endow tetracycline with a noticeable capability in binding biological targets. A salient property of tetracyclines is the presence of multiple acidic groups: four equilibrium constants have been measured for the fully protonated tetracycline (TCH₃ ⁺) but so far no clear information concerning the pK_as of the various sites has been reported. We present here a computational investigation on the correlation between the acid–base and the spectroscopic properties of this important class of compounds. Starting from the TCH₃ ⁺ species, the pK_a of all the possible deprotonation sites has been computed by DFT calculations. The computed pK_as nicely compare with the experimental data, within 1 pK_a unit, allowing us to individuate the products of the first deprotonation. This procedure has been iteratively repeated using as starting species the products singled out from the previous deprotonation, thus individuating the stepwise products of each deprotonation step. Then, the optical absorption spectra have been computed for all the species involved in the protonation/deprotonation equilibria, comparing the results with the experimental data. The good agreement between theory and experiment has allowed us to rationalize the correlation between the solution pH and the absorption spectra.     

Complexes of tetracyclines with divalent metal cations investigated by stationary and femtosecond-pulsed techniques

Spectroscopic techniques both in steady-state (in absorption and emission) and pulsed (absorption of excited states with femtosecond resolution) conditions were used to study the complexation process between six molecules belonging to the tetracycline family and Mg(2+); in the case of TC the study was extended to the metal ions Ca(2+) and Cu(2+). The study was carried out in aqueous solution at various pH values, where one acid-base form of the substrate prevails over the others. The processing of experimental results, performed by means of Singular Value Decomposition and Global Analysis methods, allowed us to evaluate the extent of interaction through the association constants, to identify the number of equilibria present in solution and the stoichiometry (1:1 or 1:2) of the tetracycline:metal ion complex, and to define the spectral and photophysical properties of the latter (in terms of fluorescence quantum yields, lifetimes and rate constants). In fact, the (allowed) radiative decay process is a minor root for the lowest excited state of the complexes which mainly decay to the ground state by internal conversion. Details of the complexation sites are proposed for the various protonated forms of tetracyclines, and for the various cations in the case of TC. In particular, the molecular structure seems to affect significantly the dynamics of interaction when the upper peripheral region of tetracycline is rich in additional hydroxyl groups. Moreover, the state of protonation of the substrate produces changes in the order of the complexation sites, whose affinity for the cation increases significantly when they are negatively charged owing to the loss of protons. Magnesium and calcium (hard cations) give similar interactions, at least in acid solution, while copper(ii) (borderline cation) binds more efficiently on different sites, thus forming complexes with different properties.     

Top-down patterning of zeolitic imidazolate framework composite thin films by deep X-ray lithography

For the first time a top-down process was used to control the spatial location of Metal-Organic Frameworks on a surface. Deep X-ray lithography was utilised to micropattern a Zeolitic Imidazolate Framework layer on a sol-gel surface, with exposure hardening the sol-gel by inducing crosslinking while leaving the frameworks intact.