Surface dynamics of coadsorbed CO and D2O on Pt(100) in ultrahigh vacuum as studied by time-resolved infrared reflection absorption spectroscopy

Changes in the properties of CO adsorbed at saturation coverages on Pt(100) induced by subsequent coadsorption of fixed amounts of D2O at 105 K in ultrahigh vacuum (UHV) were monitored by time-resolved infrared reflection absorption spectroscopy (tr-IRAS). The linear- and bridge-bonded CO stretching features were found to change in intensity and shift toward lower energies as a function of time at fixed CO and D2O coverages. Also observed was the development of multiple features in both CO spectral regions depending on the amount of D2O on the surface. These findings indicate that, under the conditions of these experiments, the interfacial dynamics are relatively slow, on the order of minutes, involving a gradual rearrangement of adsorbed CO and D2O on the surface to yield surface solvated CO, as has been suggested in the literature (Kizhakevariam et al. J. Chem. Phys. 1994, 100, 6750). This factor should be considered when comparing, quantitatively, shifts induced by water coadsorption with CO on Pt single crystals in UHV with CO adsorption on the same surfaces in electrochemical environments.     

A self-assembled multivalent pseudopolyrotaxane for binding galectin-1

A self-assembled pseudopolyrotaxane consisting of lactoside-displaying cyclodextrin (CD) "beads" threaded onto a linear polyviologen "string" was investigated for its ability to inhibit galectin-1-mediated T-cell agglutination. The CDs of the pseudopolyrotaxane are able to spin around the axis of the polymer chain as well as to move back and forth along its backbone to alter the presentation of its ligand. This supramolecular superstructure incorporates all the advantages of polymeric structures, such as the ability to span large distances, along with a distinctively dynamic presentation of its lactoside ligands to afford a neoglycoconjugate that can adjust to the relative stereochemistries of the lectin's binding sites. The pseudopolyrotaxane exhibited a valency-corrected 10-fold enhancement over native lactose in the agglutination assay, which was greater than the enhancements observed for lactoside-bearing trivalent glycoclusters and a lactoside-bearing chitosan polymer tested using the same assay. The experimental results indicate that supramolecular architectures, such as the pseudopolyrotaxane, provide tools for investigating protein-carbohydrate interactions.     

Contact mechanics studies with the quartz crystal microbalance: origins of the contrast factor for polymer gels and solutions

A contact mechanics methodology utilizing the quartz crystal microbalance (QCM) has been applied to study the spreading behavior of polymer solutions and gels. Changes in the resonant frequency and in the dissipation are monitored as these materials are brought into contact with the electrode surface of the QCM. The primary application is in studies of elastic polymer gels, where spreading over the surface of the QCM is limited by the elasticity of the gel. Simultaneous measurement of the applied loads and displacements, along with measurement of the QCM/gel contact area, the frequency shift, and the dissipation, enable us to calibrate the QCM as a contact sensor. While changes in the frequency and dissipation both depend linearly on the contact area, measurements of the dissipation provide a more reliable indicator. The relationship between the dissipation and the contact area is determined by the solvent viscosity and by the high-frequency intrinsic viscosity of the system of interest. This result is consistent with previous results on the high-frequency rheological behavior of polymer solutions.     

Principles of rapid polymerase chain reactions: mathematical modeling and experimental verification

Polymerase chain reaction (PCR) is an important diagnostic tool for the amplification of DNA. The PCR process can be treated as a problem in biochemical engineering. This study focuses on the development of a mathematical model of the polymerase chain reaction. The PCR process consists of three steps: denaturation of target DNA, annealing of sequence-specific oligonucleotide primers and the enzyme-catalyzed elongation of the annealed complex (primer:DNA:polymerase). The denaturation step separates the double strands of DNA; this model assumes denaturation is complete. The annealing step describes the formation of a primer-fragment complex followed by the attachment of the polymerase to form a ternary complex. This step is complicated by competitive annealing between primers and incomplete fragments including primer-primer reactions. The elongation step is modeled by a stochastic method. Species that compete during the elongation step are deoxynucleotide triphosphates dCTP, dATP, dTTP, dGTP, dUTP, and pyrophosphate. Thermal deamination of dCTP to form dUTP is included in the model. The probability for a species to arrive at the active site is based on its molar fraction. The number of random insertion events depends on the average processing speed of the polymerase and the elongation time of the simulation. The numerical stochastic experiment is repeated a sufficient number of times to construct a probability density distribution (PDF). The moment of the PDF and the annealing step products provide the product distribution at the end of the elongation step. The overall yield is compared to six experimental values of the yield. In all cases the comparisons are very good.     

EPR spectroscopy on irradiated nickel tetracyanide in NaCl host lattice: mechanism for the simultaneous formation of reduced and oxidized species

The kinetics of oxidized and reduced Ni²⁺ complexes produced by X-ray irradiation on single crystals of NaCl doped with [Ni(CN)₄]²⁻ is studied by Electron Paramagnetic Resonance at room temperature. The interdependent generation of these two complexes is attributed to migration of the charge compensating vacancy from the reduced to the oxidized complex in a reversible reaction. At higher X-ray doses, there is a predominant formation of the reduced complex.     

LONG-RANGE TRIPLET-SINGLET ENERGY TRANSFER FROM ENZYME GENERATED TRIPLET ACETONE TO XANTHENE DYES

Enzyme-generated and protected acetone transfers its energy to xanthene dyes by a nontrivial process. The relative populations of the S₁ state are indicative of the operation of a heavy atom effect, being 1:15:100 for fluorescein, eosine and Rose Bengal. On the other hand Stern-Volmer constants and k _ET⁰ values are similar for the three dyes and are remarkably higher than for collisional processes.
It is tentatively suggested that at least for eosine and Rose Bengal, a triplet-triplet cxciton transfer may occur to populate an upper triplet state of the dye followed by heavy-atom enhanced intersystem crossing to the S₁ state.     

Cooperative two-photon-induced chemical bond formation during a Kr+F2 collision to form KrF

The reactive Kr⁺F₂⁻ potential energy surface is probed by two-photon, laser-induced chemical bond formation during a Kr+F₂ collision. This is compared with the pulsed laser excitation (two-photon) of Kr(2p₉) followed by collision with F₂ leading to the formation of KrF(B, C). In addition to reporting the excitation spectrum for the two-phonon-induced collision process, these techniques were used to determine quenching rate constants of Kr₂F^*. Quenching by Xe gives XeF(B, C) with rate constant (1.5±0.2)×10⁻¹⁰ cm³ s⁻¹; the quenching rate constant for F₂ is (1.5±0.2)×10⁻¹⁰ cm³ s⁻¹, and the radiative lifetime of Kr₂F^* is 240±35 ns. The quenching rate constant for the coupled Kr(2p₈) and Kr(2p₉) levels by F₂ is (13±2)×10⁻¹⁰ cm³ s⁻¹.     

Determination of tea catechins

An overview of analytical methods for the measurement of biologically important tea catechins is presented. Liquid chromatography and capillary electrophoresis are the most cited techniques for catechin separation, identification and quantitation. Liquid chromatography with ultraviolet detection is frequently used; however, mass spectrometry, electrochemical, fluorescence and chemiluminescence detection are also utilized in cases where more sensitive or selective detection is needed. Two modes of capillary electrophoresis, capillary zone electrophoresis and micellar electrokinetic capillary chromatography, have been employed for the determination of catechins. Both modes of capillary electrophoresis are based on ultraviolet detection. Additional analytical techniques, such as gas chromatography, thin-layer chromatography, paper chromatography, spectrophotometry, biosensing, chemiluminescence and nuclear magnetic resonance spectroscopy have also been utilized for the determination of catechins and are reviewed herein.     

Catalytic Asymmetric Propionate Aldol Reactions via Acyl Halide-Aldehyde Cyclocondensations

Catalyzed asymmetric acyl halide-aldehyde cyclocondensation (AAC) reactions afford highly enantiomerically enriched 3,4-disubstituted-2-oxetanones. These reactions constitute catalytic asymmetric propionate aldol additions. An optically active Al(III)-triamine complex (10 mol %) catalyzes the di(isopropyl)ethylamine-mediated cyclocondensation of propionyl bromide and a variety of aldehydes to afford beta-lactone adducts with uniformly high enantioselection (90 --> 98% ee), diastereoselection (74 --> 98% de), and chemical yields (78-90%). Lactone ring opening reveals that the enantiomerically enriched beta-lactones act as surrogates for syn propionate aldol adducts.     

Enantioenriched dihydropyrones from beta-lactone templates

[reaction: see text] Optically active 4-substituted 2-oxetanones provide conduits for preparing 2,3-dihydro-4H-pyrone heterocycles. Enantioenriched beta-lactones are prepared by asymmetric catalytic acyl halide-aldehyde cyclocondensation reactions. Hydrazone anion-mediated beta-lactone ring opening and ensuing cyclization-dehydroamination of the derived beta-ketohydrazone afford the desired dihydropyrones (68-81%). Optimized lactone ring-opening-cyclization reaction conditions render a variety of optically active 4-substituted-2-oxetanones as effective precursors to enantioenriched 2,3-dihydro-4H-pyrones.