Origin of the vertebrate visual cycle: III. Distinct distribution of RPE65 and beta-carotene 15,15'-monooxygenase homologues in Ciona intestinalis

We previously identified three genes that encode putative visual cycle proteins that are homologues of retinal G-protein coupled receptor (Ci-opsin3), cellular retinaldehyde-binding protein (Ci-CRALBP) and beta-carotene 15,15'-monooxygenase (Ci-BCO) in the ascidian Ciona intestinalis. Ci-opsin3 and Ci-CRALBP are localized in both ocellus photoreceptor cells and surrounding non-photoreceptor cells in the brain vesicle of the larva. In the present study, we investigated the possible role and evolutionary origin of the BCO/RPE65 family in the visual cycle by analyzing Ci-BCO localization by immunohistochemistry and by identifying a novel gene that encodes a homologue of retinal pigment epithelium-specific 65 kDa protein (Ci-RPE65) in C. intestinalis. In situ hybridization and expressed sequence tag (EST) profiles consistently suggest that Ci-RPE65 is not significantly expressed in the ocellus and brain vesicle of the larva. Ci-RPE65 is expressed in the neural complex, a photoreceptor organ of the adult ascidian, at a level comparable to that of Ci-opsin3 and Ci-CRALBP. Ci-RPE65 is also expressed in various adult tissues, including the gill, body wall and intestine, suggesting that Ci-RPE65 plays a role in addition to that in the visual cycle. In contrast, Ci-BCO is predominantly localized in ocellus photoreceptor cells of the larva. The larval visual cycle seems to use Ci-opsin3 as a photo-isomerase. Our results also suggest that the RPE65-dependent visual cycle is used in the adult photoreceptors of a primitive chordate.     

Enantioselective hydrogenation of aromatic ketones catalyzed by Ru complexes of Goodwin-Lions-type sp2N/sp3N hybrid ligands R-BINAN-R'-Py

Goodwin-Lions-type sp2N/sp3N hybrid ligands R-BINAN-R'-Py possessing a C2 axis binaphthyl skeleton have been designed and synthesized. Combination of the new non-phosphine ligand with Ru(pi-CH2C(CH3)CH2)2(cod) has been revealed to catalyze the hydrogenation of aromatic ketones with high enantioselectivity of up to 99% ee. The reaction proceeds essentially without the need for any bases, but the reactivity is enhanced by the addition of KOt-C4H9 attaining an S/C ratio of up to 10 000. The success should expand the range of possibilities in designing catalysts not only for hydrogenation but also for many other reactions.     

On the Existence and Stability of Time Periodic Solution to the Compressible Navier–Stokes Equation on the Whole Space

The existence of a time periodic solution of the compressible Navier–Stokes equation on the whole space is proved for a sufficiently small time periodic external force when the space dimension is greater than or equal to 3. The proof is based on the spectral properties of the time-T-map associated with the linearized problem around the motionless state with constant density in some weighted L ^∞ and Sobolev spaces. The time periodic solution is shown to be asymptotically stable under sufficiently small initial perturbations and the L ^∞ norm of the perturbation decays as time goes to infinity.     

Amphidinolides T2, T3, and T4, new 19-membered macrolides from the dinoflagellate Amphidinium sp. and the biosynthesis of amphidinolide T1.

Three new 19-membered macrolides, amphidinolides T2 (2), T3 (3), and T4 (4), structurally related to amphidinolide T1 (1) have been isolated from two strains of marine dinoflagellates of the genus Amphidinium. The structures of 2-4 were elucidated on the basis of spectroscopic data. The absolute configurations at C-7, C-8, and C-10 of 1-4 were determined by comparison of NMR data of their C-1-C-12 segments with those of synthetic model compounds for the tetrahydrofuran portion. The biosynthetic origins of amphidinolide T1 (1) were investigated on the basis of 13C NMR data of a 13C enriched sample obtained by feeding experiments with [1-(13)C], [2-(13)C], and [1,2-(13)C2] sodium acetates and 13C-labeled sodium bicarbonate in the cultures of the dinoflagellate. These incorporation patterns suggested that amphidinolide T1 (1) was generated from four successive polyketide chains, an isolated C1 unit formed from C-2 of acetates, and three unusual C2 units derived only from C-2 of acetates. Furthermore, it is noted that five oxygenated carbons of C-1, C-7, C-12, C-13, and C-18 were not derived from the C-1 carbonyl, but from the C-2 methyl of acetates.     

On the Nature of Functional Differentiation: The Role of Self-Organization with Constraints

The focus of this article is the self-organization of neural systems under constraints. In 2016, we proposed a theory for self-organization with constraints to clarify the neural mechanism of functional differentiation. As a typical application of the theory, we developed evolutionary reservoir computers that exhibit functional differentiation of neurons. Regarding the self-organized structure of neural systems, Warren McCulloch described the neural networks of the brain as being “heterarchical”, rather than hierarchical, in structure. Unlike the fixed boundary conditions in conventional self-organization theory, where stationary phenomena are the target for study, the neural networks of the brain change their functional structure via synaptic learning and neural differentiation to exhibit specific functions, thereby adapting to nonstationary environmental changes. Thus, the neural network structure is altered dynamically among possible network structures. We refer to such changes as a dynamic heterarchy. Through the dynamic changes of the network structure under constraints, such as physical, chemical, and informational factors, which act on the whole system, neural systems realize functional differentiation or functional parcellation. Based on the computation results of our model for functional differentiation, we propose hypotheses on the neuronal mechanism of functional differentiation. Finally, using the Kolmogorov–Arnold–Sprecher superposition theorem, which can be realized by a layered deep neural network, we propose a possible scenario of functional (including cell) differentiation.     

Zwitterionic Mixed Valence: Internalizing Counteranions into a Biferrocenium Framework toward Molecular Expression of Half-Cells in Quantum Cellular Automata

Realization of molecular quantum cellular automata (QCA), a promising architecture for molecular computing through current-free processes, requires improved understanding and application of mixed-valence (MV) molecules. In this report, we present an electrostatic approach to creating MV subspecies through internalizing opposite charges in close proximity to MV ionic moieties. This approach is demonstrated by unsymmetrically attaching a charge-responsive boron substituent to a well-known organometallic MV complex, biferrocenium. Guest anions (CN⁻ and F⁻) bind to the Lewis acidic boron center, leading to unusual blue-shifts of the intervalence charge-transfer (IVCT) bands. To the best of our knowledge, this is the first reported example of a zwitterionic MV series in which the degree of positive charge delocalization can be varied by changing the bound anions, and serves to clarify the interplay between IVCT parameters. The key underlying factor is the variable zero-level energy difference in the MV states. This work provides new insight into imbuing MV molecules with external charge-responsiveness, a prerequisite of molecular QCA techniques.     

Tau Functions of q-Painlevé III and IV Equations

We present a geometric approach to τ-functions of the q-Painlevé III and IV equations via rational surfaces with affine Weyl group symmetry of type (A ₂+A ₁)⁽¹⁾. We also study a similarity reduction of the q-KP hierarchy to the equations. Mathematics Subject Classification (2000). 34M55, 37K10, 39A13     

A Class of Integrable and Nonintegrable Mappings and their Dynamics

We analyse a class of mappings which by construction do not belong to the QRT family. We show that some of the members of this class have invariants of high degree. A new linearisable mapping is also identified. A mapping which possesses confined singularities while having nonzero algebraic entropy is presented. Its dynamics are studied in detail and shown to be related intimately to the Fibonacci recurrence.