Effects of water on the structure and bonding of resorcinol in the interlayer of montmorillonite nanocomposite: a periodic first principle study

Resorcinol forms a novel nanocomposite in the interlayer of montmorillonite. This resorcinol oligomer is stable inside the clay matrixes even above the boiling point of the monomer. A periodic ab initio calculation was performed with hydrated and nonhydrated montmorillonite before and after intercalation of resorcinol. For the most feasible dimer and tetramer shaped oligomer of resorcinol, the intramolecular and intermolecular hydrogen bonding feasibility has been tested using the DFT-BLYP approach and the DNP basis set in the gas phase and in the presence of aqueous solvent. After locating the active site through Fukui functions within the helm of the hard-soft acid-base principle, the relative nucleophilicity of the active cation sites in their hydrated state has been calculated. A novel quantitative scale in terms of the relative nucleophilicity and electrophilicity of the interacting resorcinol oligomers before and after solvation is proposed. Besides that, a comparison with a hydration situation and also the strength of the hydrogen bridges have been evaluated using mainly the dimer and cyclic tetramer type oligomers of resorcinol. Using periodic ab initio calculations, the formation mechanism was traced by the following two ways: (1) resorcinol molecules combine without any interaction with water or (2) resorcinol oligomerizes through water. Both the mechanism is compared and the effect of water on the process is elucidated. The results show that resorcinol molecules combine after hydration only and hence they are stable at higher temperature. The fittings of the oligomers were also tested as well by periodic calculation to compare the stability of the oligomers inside the newly formed clay nanocomposite.     

Control of refractive index of sol-gel tungsten oxide films

Tungsten oxide films were prepared by a complexing agent-assisted sol-gel process. All the films were at 500°C were crystalline and transparent. The refractive index n and extinction coefficient k of the films were calculated from the transmittance and reflectance spectra in the visible and infrared regions. The values of n were lowered to depend on the organic ligands used in the preparation of the sols. The use of such ligands may be a mean to control the refractive index of coatings.     

Surface induced hydrogen-bonded macrocluster formation of methanol on silica surfaces

Recently, we have succeeded in identifying the structure of the adsorption layer of ethanol on a silica surface in cyclohexane to be a hydrogen-bonded linear aggregate (polymer), which we call a surface molecular macrocluster. In this work, we studied the effect of the miscibility of liquids on the formation of the surface molecular macroclusters for confirming that this is a surface induced phenomenon. We investigated the interaction and the structure of methanol adsorbed on a silica surface in methanol-cyclohexane binary liquids by a combination of colloidal probe atomic force microscopy, adsorption excess isotherm measurement, and FTIR spectroscopy using the attenuated total reflection (ATR) mode, and compared the results with those of the ethanol-cyclohexane and 1-propanol-cyclohexane binary liquids. The former system is immiscible at methanol concentrations of ca. 8-90 mol %, and the latter two are miscible at any composition. At 0.03 mol % methanol, which is far from the critical concentration for the phase separation, the contact of the methanol macrocluster layers formed on the silica surface brought about the attraction from a distance of 42 +/- 5 nm which was similar to that observed in ethanol-cyclohexane. At a methanol concentration of 9.0 mol %, above bulk phase separation, completely different force profiles were observed. These results demonstrated that the molecular macrocluster formation was different from the wetting induced by the bulk.     

A fluorescent anion sensor that works in neutral aqueous solution for bioanalytical application

Anion recognition and anion sensing are of interest because anions play many important roles in living organisms. Most currently known anion sensors work only in organic solution, but sensors for biological applications are required to function in neutral aqueous solution. We have designed and synthesized a novel fluorescent sensor for anions. The sensor molecule 1-Cd(II) contains 7-amino-4-trifluoromethylcoumarin as a fluorescent reporter and Cd(II)-cyclen (1,4,7,10-tetraazacyclododecane) as an anion host. In neutral aqueous solution, Cd(II) of 1-Cd(II) is coordinated by the four nitrogen atoms of cyclen and the aromatic amino group of coumarin. When various anions are added to 100 mM HEPES buffer solution (pH 7.4) containing 1-Cd(II), the aromatic amino group of coumarin is displaced from Cd(II), causing a change of the excitation spectrum. While pyrophosphate and citrate were detected with high sensitivity, fluoride and perchlorate produced no response. Among organic anions, ATP and ADP gave strong signals, while cAMP showed little signal. By utilizing the different affinities of the sensor for AMP and cAMP, the activity of phosphodiesterase, which cleaves cyclic nucleotide, was monitored in real-time. The sensor should have many biochemical and analytical applications and the sensing principle should be widely applicable to the sensing of other molecules.     

Quantum algebraic–combinatoric study of the conformational properties of n‐alkanes. I

Based on quantum chemical calculation results, four rules were previously derived for the numbers and the sequences of the conformers of free alkane molecules. This paper builds up first an algebra to handle the conformational problem of alkanes. Partitioning the set of all sequences, the whole problem is then subdivided into three independent subcases. With the help of an equivalence relation, the sequences can be classified. According to the quantum chemical rules, certain equivalence classes do not represent conformers. A welldefined subcase of the whole problem is solved.     

Paramagnetic relaxation-based 19f MRI probe to detect protease activity

A novel design principle for 19F MRI probes detecting protease activity was developed. This principle is based on 19F MRI signal quenching by the intramolecular paramagnetic effect from Gd3+. The intramolecular Gd3+ dramatically attenuated the 19F probe signal, and the paramagnetic effect was cancelled by the probe hydrolyzation by caspase-3. Using this probe, it was shown that the probe could detect caspase-3 activity spatially from a phantom image using 19F MRI.     

Shape-Selective Alkylation of Isopropylnaphthalene over HM Zeolite. A Theoretical Study

A first principle quantum chemical method for determining the shape of molecules has been elaborated and its value in interpreting the experimentally found shape selectivity in isopropylation of isopropylnaphthalene on H-mordenite zeolite is demonstrated. In line with experimental results, it is found that 2,6-diisopropylnaphthalene is the most feasible product since it diffuses through the main channels of mordenite the easiest among the possible isomers.     

Enhancement in thermal stability and resistance to denaturants of lipase encapsulated in mesoporous silica with alkyltrimethylammonium (CTAB)

We assembled a highly durable conjugate with both a high-density accumulation and a regular array of lipase, by encapsulating it in mesoporous silica (FSM) with alkyltrimethylammonium (CTAB) chains on the surface. The activity for hydrolyzing esters of the lipase immobilized in mesoporous silica was linearly related to the concentration of lipase, whereas that of non-immobilized lipase showed saturation due to self-aggregation at a high concentration. The lipase conjugate also had increased resistance to heating when stayed in the silica coupling with CTAB. In addition, encapsulating the enzyme with FSM coupled CTAB caused the lipase to remain stable even in the presence of urea and trypsin, suggesting that the encapsulation prevented dissociation and denaturing. This conjugate had much higher activity and much higher stability for hydrolyzing esters when compared to the native lipase. These results show that FSM provides suitable support for the immobilization and dispersion of proteins in mesopores with disintegration of the aggregates.     

Use of zeolite to refold a disulfide-bonded protein

Zeolites are microporous crystalline aluminosilicates with a highly ordered structure. Using zeolite beta as an adsorbent, denatured/reduced hen egg lysozyme was refolded to the active form at high concentrations. The denatured/reduced lysozyme was adsorbed onto the zeolite and the protein was refolded by desorbing it into refolding buffer, consisting of redox reagents, guanidine hydrochloride, polyethylene glycol, and L-arginine. This zeolite refolding method could be highly effective for various kinds of proteins, refolding them with high efficiency even when they contain disulfide bonds.