Emissive Synthetic Cofactors: A Highly Responsive NAD+ Analogue Reveals Biomolecular Recognition Features

Apart from its vital function as a redox cofactor, nicotinamide adenine dinucleotide ( NAD⁺ ) has emerged as a crucial substrate for NAD⁺ -consuming enzymes, including poly(ADP-ribosyl)transferase 1 (PARP1) and CD38/CD157. Their association with severe diseases, such as cancer, Alzheimer's disease, and depressions, necessitates the development of new analytical tools based on traceable NAD⁺ surrogates. Here, the synthesis, photophysics and biochemical utilization of an emissive, thieno[3,4-d]pyrimidine-based NAD⁺ surrogate, termed N^thAD⁺ , are described. Its preparation was accomplished by enzymatic conversion of synthetic ^th ATP by nicotinamide mononucleotide adenylyltransferase 1 (NMNAT1). The new NAD⁺ analogue possesses useful photophysical features including redshifted absorption and emission maxima as well as a relatively high quantum yield. Serving as a versatile substrate, N^thAD⁺ was reduced by alcohol dehydrogenase (ADH) to N^thADH and afforded ^thADP-ribose ( ^th ADPr ) upon hydrolysis by NAD⁺ -nucleosidase (NADase). Furthermore, N^thAD⁺ was engaged in cholera toxin A (CTA)-catalyzed mono(^thADP-ribosyl)ation, but was found incapable in promoting PARP1-mediated poly(^thADP-ribosyl)ation. Due to its high photophysical responsiveness, N^thAD⁺ is suited for spectroscopic real-time monitoring. Intriguingly, and as an N7-lacking NAD⁺ surrogate, the thieno-based cofactor showed reduced compatibility (i.e., functional similarity compared to native NAD⁺ ) relative to its isothiazolo-based analogue. The distinct tolerance, displayed by diverse NAD⁺ producing and consuming enzymes, suggests unique biological recognition features and dependency on the purine N7 moiety, which is found to be of importance, if not essential, for PARP1-mediated reactions.     

Permutation polynomials with low differential uniformity over finite fields of odd characteristic

In this paper, we propose a construction of functions with low differential uniformity based on known perfect nonlinear functions over finite fields of odd characteristic. For an odd prime power q, it is proved that the proposed functions over the finite field Fq are permutations if and only if q≡3(mod 4).     

Determination of polycyclic aromatic hydrocarbons in waters by ultrasound-assisted emulsification-microextraction and gas chromatography-mass spectrometry

An ultrasound-assisted emulsification-microextraction (USAEME) procedure was developed for the extraction of US EPA 16 polycyclic aromatic hydrocarbons (PAHs) in 10 mL of water samples, with subsequent determination by gas chromatography-mass spectrometry (GC-MS). After determination of the most suitable solvent and solvent volume, several other parameters (i.e., extraction time, centrifugation time and ionic strength of the sample) were optimized using a 2³ factorial experimental design. Limits of detection ranged from 0.001 to 0.036 μg L⁻¹. The developed procedure was applied to fortified distilled water with different fortification levels (0.5, 2 and 5 μg L⁻¹). Recoveries were over 92% and relative standard deviations of the recoveries were below 8%. The efficiency of the USAEME was compared with traditional liquid-liquid extraction (LLE) and solid-phase extraction on real water samples (i.e., tap water, well water and surface (lake) water as well as domestic and industrial wastewaters). The USAEME showed comparable efficiencies especially with LLE. The developed USAEME was demonstrated to be robust, viable, simple, rapid and easy to use for the determination of PAHs in water samples by GC-MS.     

A combined experimental and theoretical study of the kinetics and mechanism of the addition of alcohols to electronically stabilized silenes: a new mechanism for the addition of alcohols to the Si=C bond

The stabilized silene 1,1-bis(trimethylsilyl)-2-adamantylidenesilane (4) has been generated by photolysis of a novel trisilacyclobutane derivative in various solvents and studied directly by kinetic UV spectrophotometry. Silene 4 decays with second-order kinetics in degassed hexane solution at 23 degrees C (k/epsilon = 8.6 x 10(-6) cm s(-1)) due to head-to-head dimerization. It reacts rapidly with oxygen [k(25 degrees C) approximately 3 x 10(5) M(-1) s(-1)] but approximately 10 orders of magnitude more slowly with methanol (MeOH) than other silenes that have been studied previously. The data are consistent with a mechanism involving reaction with the hydrogen-bonded dimer of the alcohol, (MeOH)(2) (k = 40 +/- 3 M(-1) s(-1); k(H)/k(D) = 1.7 +/- 0.2). The stable analogue of silene 4, 1-tert-butyldimethylsilyl-1-trimethylsilyl-2-adamantylidenesilane (5), reacts approximately 50 times more slowly, but via the same mechanism. The mechanism for addition of water and methanol (ROH; R = H, Me) to 4, 5, and the model compound 1,1-bis(silyl)-2,2-dimethylsilene (3a) has been studied computationally at the B3LYP/6-31G(d) and MP2/6-31G(d) levels of theory. Hydrogen-bonded complexes with monomeric and dimeric methanol, in which the Si=C bond plays the role of nucleophile, have been located computationally for all three silenes. Reaction pathways have been characterized for reaction of the three silenes with monomeric and dimeric ROH and reveal significantly lower barriers for reaction with the dimeric form of the alcohol in each case. The calculations indicate that 5 should be approximately 40-fold less reactive toward dimeric MeOH than 4, in excellent agreement with the approximately 50-fold difference in the experimental rate constants for reaction in hexane solution.     

Determination of selected polychlorinated biphenyls in soil by miniaturised ultrasonic solvent extraction and gas chromatography-mass-selective detection

Miniaturised ultrasonic solvent extraction procedure was developed for the determination of selected polychlorinated biphenyls (PCBs) in soil samples by gas chromatography-mass-selective detection by using 2³ factorial experimental design. Recoveries of PCBs from fortified soil samples are over 90% for three different fortification levels between 40 and 120 μg kg⁻¹, and relative standard deviations of the recoveries are below 7%. The limits of detection (LODs) ranged from 0.003 to 0.006 μg kg⁻¹. The performance of the proposed method was compared to traditional shake flask extraction method on the spiked real soil sample and extraction methods showed comparable efficiencies. Proposed miniaturised ultrasonic solvent extraction offers several advantages, i.e., reducing sample requirement for measurement of target compound, less solvent consumption and reducing the costs associated with solvent purchase and waste disposal.     

(tBu2MeSi)2Sn=Sn(SiMetBu2)2: a distannene with a >Sn=Sn< double bond that is stable both in the solid state and in solution

((t)Bu(2)MeSi)(2)Sn=Sn(SiMe(t)Bu(2))(2) 1, prepared by the reaction of (t)Bu(2)MeSiNa with SnCl(2)-diox in THF and isolated as dark-green crystals, represents the first example of acyclic distannene with a Sn=Sn double bond that is stable both in the crystalline form and in solution. This was proved by the crystal and NMR spectral data of 1. Distannene 1 has these peculiar structural features: a shortest among all acyclic distannenes Sn=Sn double bond of 2.6683(10) A, a nearly planar geometry around both Sn atoms, and a highly twisted Sn=Sn double bond. The reactions of 1 toward carbon tetrachloride and phenylacetylene also correspond to the reactivity anticipated for the Sn=Sn double bond. The one-electron reduction of 1 with potassium produced the distannene anion radical, the heavy analogue of alkene ion radicals, for which the particular crystal structure and low-temperature EPR behavior are also discussed.     

Five-dimensional -optimal lattice rules

A major search program is described that has been used to determine a set of five-dimensional -optimal lattice rules of enhanced trigonometric degrees up to 12. The program involved a distributed search, in which approximately 190 CPU-years were shared between more than 1,400 computers in many parts of the world.

     

Photodimerizable ditopic ligand

[reaction: see text] The synthesis, photophysical properties, and structural characterization of a photodimerizable ditopic ligand are described. Upon irradiation at 366 nm, ligand 1 dimerizes to the head-to-tail tetra-bpy ligand 2. This thermally stable photodimer can be dissociated back to 1 using higher energy irradiation (254 nm).     

Simple conversion of aromatic amines into azides

[reaction: see text] A straightforward and highly efficient synthesis of aromatic azides from the corresponding amines is accomplished using triflyl azide under mild conditions.