Comparison of the performance of dispersion-corrected density functional theory for weak hydrogen bonds

Potential energy curves for five complexes with weak to medium strong hydrogen bonds have been computed with dispersion corrected DFT methods. The electronic density based vdW-DF2 and VV10 van der Waals density functionals have been tested, as well as an atom pair-wise correction method (DFT-D3). The short-range exchange-correlation components BLYP and rPW86-PBE together with the extended aug-cc-pVQZ basis sets have been employed. Reference data have been computed at the estimated CCSD(T)/CBS(aQ-a5) level of theory. The investigated systems are CH(4)·NH(3), Cl(3)CH·NH(3), NH(3)·NH(3), CH(3)F·C(2)H(2) and CH(3)F·H(2)O with binding energies ranging from -0.7 kcal mol(-1) to -5.5 kcal mol(-1). We find that all dispersion corrected methods perform reasonably well for these hydrogen bonds, but also observe distinct differences. The BLYP-D3 method provides the best results for three out of five systems. For the fluorinated complexes, the VV10 method gives remarkably good results. The vdW-DF2 method yields good interaction energies similar to the other methods (mean average deviation of 0.2-0.3 kcal mol(-1)), but fails to provide accurate equilibrium separations. Based on these results and previous experience with the computation of non-covalent interactions, for large-scale applications we can recommend DFT-D3 based structure optimizations with subsequent checking of interaction energies by single-point VV10 computations. Comparison of the DFT-D3 and VV10 results leads to the conclusion that the short-range exchange-correlation functional and not the dispersion correction mainly determines the achievable accuracy.     

Comparison of wet microwave digestion methods of plant materials for the determination of metals by flame atomic absorption spectrometry

Microwave closed-system wet digestion procedures for plant samples were examined. Each procedure was tested with samples of tobacco and cabbage, and included digestion by the use of different acids composition, almost complete evaporation of the digest, and then dissolution of the residue in 1% nitric acid. Three microwave digestion programs that varied power, duration, and temperature were used. Closed-vessel reactions followed open-vessel reaction-delay time. Using flame atomic absorption spectrometry on the digests, four or five elements were determined to evaluate effectiveness, precision and accuracy of analytes extraction into solution. After a preliminary study of tobacco digests, the four most effective procedures were chosen, and detailed investigations were carried out on both tobacco and cabbage reference materials. Although all four of the final procedures were accurate, the most precise procedure, with the lowest errors of determination, was using reverse ‘aqua regia’ for tobacco and ‘aqua regia’ for cabbage.     

Nanofluidic osmotic power generators – advanced nanoporous membranes and nanochannels for blue energy harvesting

The increase of energy demand added to the concern for environmental pollution linked to energy generation based on the combustion of fossil fuels has motivated the study and development of new sustainable ways for energy harvesting. Among the different alternatives, the opportunity to generate energy by exploiting the osmotic pressure difference between water sources of different salinities has attracted considerable attention. It is well-known that this objective can be accomplished by employing ion-selective dense membranes. However, so far, the current state of this technology has shown limited performance which hinders its real application. In this context, advanced nanostructured membranes (nanoporous membranes) with high ion flux and selectivity enabling the enhancement of the output power are perceived as a promising strategy to overcome the existing barriers in this technology. While the utilization of nanoporous membranes for osmotic power generation is a relatively new field and therefore, its application for large-scale production is still uncertain, there have been major developments at the laboratory scale in recent years that demonstrate its huge potential. In this review, we introduce a comprehensive analysis of the main fundamental concepts behind osmotic energy generation and how the utilization of nanoporous membranes with tailored ion transport can be a key to the development of high-efficiency blue energy harvesting systems. Also, the document discusses experimental issues related to the different ways to fabricate this new generation of membranes and the different experimental set-ups for the energy-conversion measurements. We highlight the importance of optimizing the experimental variables through the detailed analysis of the influence on the energy capability of geometrical features related to the nanoporous membranes, surface charge density, concentration gradient, temperature, building block integration, and others. Finally, we summarize some representative studies in up-scaled membranes and discuss the main challenges and perspectives of this emerging field.

Advanced nanostructured membranes with high ion flux and selectivity bring new opportunities for generating clean energy by exploiting the osmotic pressure difference between water sources of different salinities.     

Architecture of the rings of 5-arylidenerhodanine derivatives versus P-gp inhibition

5-Arylidene derivatives of rhodanine show various biological activities. The new crystal structures of five derivatives investigated towards ABCB1 efflux pump modulation are reported, namely, 2-[5-([1,1′-biphenyl]-4-ylmethylidene]-4-oxo-2-thioxothiazolidin-3-yl)acetic acid dimethyl sulfoxide monosolvate, C₁₈H₁₃NO₃S₂·C₂H₆OS ( 1 ), 4-[5-([1,1′-biphenyl]-4-ylmethylidene]-4-oxo-2-thioxothiazolidin-3-yl)butanoic acid, C₂₀H₁₇NO₃S₂ ( 2 ), 5-[4-(benzyloxy)benzylidene]-2-thioxothiazolidin-4-one, C₁₇H₁₃NO₂S₂ ( 3 ), 4-{5-[4-(benzyloxy)benzylidene]-4-oxo-2-thioxothiazolidin-3-yl}butanoic acid, C₂₁H₁₉NO₄S₂ ( 4 ), and 5-[4-(diphenylamino)benzylidene]-2-thioxothiazolidin-4-one, C₂₂H₁₆N₂OS₂ ( 5 ). Compounds 1 and 3 – 5 crystallize in the triclinic space group P, while 2 crystallizes in the monoclinic space group P2₁/n, where the biphenyl moiety is observed in two positions (A and B). Two molecules are present in the asymmetric unit of 5 and, for the other four compounds, there is only one molecule; moreover, 1 crystallizes with one dimethyl sulfoxide molecule. The packing of the molecules containing a carboxyl group ( 1 , 2 and 4 ) is determined by O—H…O hydrogen bonds, while in the other two compounds ( 3 and 5 ), the packing is determined by N—H…O hydrogen bonds. Additionally, induced-fit docking studies have been performed for the active compounds to investigate their putative binding mode inside the human glycoprotein P (P-gp) binding pocket.     

Decoding the Fucose Migration Product during Mass-Spectrometric analysis of Blood Group Epitopes

Fucose is a signaling carbohydrate that is attached at the end of glycan processing. It is involved in a range of processes, such as the selectin-dependent leukocyte adhesion or pathogen-receptor interactions. Mass-spectrometric techniques, which are commonly used to determine the structure of glycans, frequently show fucose-containing chimeric fragments that obfuscate the analysis. The rearrangement leading to these fragments—often referred to as fucose migration—has been known for more than 25 years, but the chemical identity of the rearrangement product remains unclear. In this work, we combine ion-mobility spectrometry, radical-directed dissociation mass spectrometry, cryogenic IR spectroscopy of ions, and density-functional theory calculations to deduce the product of the rearrangement in the model trisaccharides Lewis x and blood group H2. The structural search yields the fucose moiety attached to the galactose with an α(1→6) glycosidic bond as the most likely product.