Orientation of deoxyhemoglobin at high magnetic fields: structural insights from RDCs in solution

Human normal adult hemoglobin (Hb A) is a tetrameric protein molecule of ~64 kDa consisting of two identical -chains and two identical -chains of 141 and 146 amino acid residues each and four bound heme moieties. In the oxygen-free form of Hb A, also known as deoxyhemoglobin A (deoxy-Hb A), the hemes are paramagnetic with S = 2. We have measured the one-bond spin-spin couplings (1JNH + 1DNH) on (15N,2H)-labeled deoxy-Hb A in solution as a function of magnetic field strengths from 11.7 to 21.1 T and found that these couplings are linearly proportional to the square of the magnetic field. This field dependence provides an opportunity to extract the residual dipolar couplings (RDCs, 1DNH) and, thus, to compare predictions about the solution structure of deoxy-Hb A to crystal structures for this molecule. Such comparison is essential for our understanding of the structure, dynamics, and function of this allosteric protein under conditions close to the physiological state. This report illustrates the usefulness of using the magnetic-field dependent RDCs to determine the solution structure of a large paramagnetic protein. This method is especially valuable for those proteins whose structures must be determined in an oxygen-free environment.     

Steric communication of chiral information observed in dendronized polyacetylenes

Structural and retrostructural analysis of helical dendronized polyacetylenes (i.e., self-organizable polyacetylenes containing first generation dendrons or minidendrons as side groups) synthesized by the polymerization of minidendritic acetylenes with [Rh(nbd)Cl]2 (nbd = 2,5-norbornadiene) reveals an approximately 10% change in the average column stratum thickness (l) of the cylindrical macromolecules with a chiral periphery, through which a strong preference for a single-handed screw-sense is communicated. The cylindrical macromolecules reversibly interconvert between a three-dimensional (3D) centered rectangular lattice (Phi r-c,k) exhibiting long-range intracolumnar helical order at lower temperatures and a two-dimensional (2D) hexagonal columnar lattice (Phi h) with short-range helical order at higher temperatures. A polymer containing chiral, nonracemic peripheral alkyl tails is found to have a larger l as compared to the achiral polymers. In methyl cyclohexane solution, the same polymer exhibits an intense signal in circular dichroism (CD) spectra, whose intensity decreases upon heating. The observed change in l indicates that the chiral tails alter the polymer conformation from that of the corresponding polymer with achiral side chains. This change in conformation results in a relatively large free energy difference (DeltaGh) favoring one helix-sense over the other (per monomer residue). The capacity to distort the polymer conformation and corresponding free energy is related to the population of branches in the chiral tails and their distance from the polymer backbone by comparison to recently reported first and second generation dendronized polyphenylacetylenes.     

铝电解中SnO2+Sb2O3+CuO惰性阳极的电流效率、腐蚀性及结构变化

系统研究了霍尔赫鲁特铝电解池中SnO₂基惰性阳极 (96%SnO₂+2%Sb₂O₃+2%CuO)的电流效率,腐蚀性以及结构变化. 评价了各种操作参数(温度、电流密度、阴阳两级的距离、冰晶石量比、Al₂O₃ 浓度和电解质组成)对电流效率和腐蚀性的影响.     

Thermochemical properties of selenium fluorides, oxides, and oxofluorides

The bond dissociation energies (BDEs), fluoride and fluorocation affinities, and electron affinities of SeF(n) (n = 1-6), SeOF(n) (n = 0-4), and SeO(2)F(n) (n = 0-2) have been predicted with coupled cluster CCSD(T) theory extrapolated to the complete basis set limit. To achieve near chemical accuracy, additional corrections were added to the complete basis set binding energies based on frozen core coupled cluster theory energies. These included corrections for core-valence effects, scalar relativistic effects, for first-order atomic spin-orbit effects, and vibrational zero point energies. The adiabatic BDEs contain contributions from product reorganization energies and, therefore, can be much smaller than the diabatic BDEs and can vary over a wide range. For thermochemical calculations, the adiabatic values must be used, whereas for bond strength and kinetic considerations, the diabatic values should be used when only small displacements of the atoms without change of the geometry of the molecule are involved. The adiabatic Se-F BDEs of SeF(n) (n = 1-6) are SeF(6) = 90, SeF(5) = 27, SeF(4) = 93, SeF(3) = 61, SeF(2) = 86, and SeF = 76 kcal/mol, and the corresponding diabatic values are SeF(6) = 90, SeF(5) = 88, SeF(4) = 93, SeF(3) = 74, SeF(2) = 86, and SeF = 76 kcal/mol. The adiabatic Se-O BDEs of SeO(n) (n = 1-3), SeOF(n) (n = 1-4), and SeO(2)F(n) (n = 1,2) range from 23 to 107 kcal/mol, whereas the diabatic ones range from 62 to 154 kcal/mol. The adiabatic Se-F BDEs of SeOF(n) (n = 1-4) and SeO(2)F(n) (n = 1,2) range from 20 to 88 kcal/mol, whereas the diabatic ones range from 73 to 112 kcal/mol. The fluoride affinities of SeF(n), (n = 1-6), SeO(n), (n = 1-3), SeOF(n), (n = 1-4), and SeO(2)F(n) (n = 1,2) range from 15 to 121 kcal/mol, demonstrating that the Lewis acidity of these species covers the spectrum from very weak (SeF(6)) to very strong (SeO(3)) acids. The electron affinities which are a measure of the oxidizing power of a species, span a wide range from 1.56 eV in SeF(4) to 5.16 eV in SeF(5) and for the free radicals are much higher than for the neutral molecules. Another interesting feature of these molecules and ions stems from the fact that many of them possess both a Se free valence electron pair and a free unpaired valence electron, raising the questions of their preferred location and their influence on the Se-F and Se═O bond strengths.     

Nickel catalyzed cross-coupling of aryl C-O based electrophiles with aryl neopentylglycolboronates

The efficiency of mesylates, sulfamates, esters, carbonates, carbamates, and methyl ethers as C-O-based electrophiles attached to the 1- or 2-position of naphthalene and to activated and nonactivated phenyl substrates was compared for the first time in Ni-catalyzed cross-coupling with phenyl neopentylglycolboronates containing electron-rich and electron-deficient substituents in their para-position. These experiments were performed in the presence of four different Ni(II)- and Ni(0)-based catalysts. Ni(II)-based catalysts mediate the cross-coupling of most 2-naphthyl C-O electrophiles with both arylboronic acids and with neopentylglycolboronates when K(3)PO(4) is used as base. The same catalysts are not efficient when CsF is used as base. However, Ni(0)-based catalysts exhibit selective efficiency, and when reactive, their efficiency is higher than that of Ni(II)-based catalysts in the presence of both K(3)PO(4) and CsF. These results provide both reaction conditions for the cross-coupling, and for the elaboration of orthogonal cross-coupling methodologies of various C-O based electrophiles with aryl neopentylglycolboronates. With the exception of mesylates and sulfamates the efficiency of all other 2-naphthyl C-O electrophiles was lower in cross-coupling with aryl neopentylglycolboronates than with arylboronic acids.     

Quantitative Assessment of Protein Structural Models by Comparison of H/D Exchange MS Data with Exchange Behavior Accurately Predicted by DXCOREX

Peptide amide hydrogen/deuterium exchange mass spectrometry (DXMS) data are often used to qualitatively support models for protein structure. We have developed and validated a method (DXCOREX) by which exchange data can be used to quantitatively assess the accuracy of three-dimensional (3-D) models of protein structure. The method utilizes the COREX algorithm to predict a protein’s amide hydrogen exchange rates by reference to a hypothesized structure, and these values are used to generate a virtual data set (deuteron incorporation per peptide) that can be quantitatively compared with the deuteration level of the peptide probes measured by hydrogen exchange experimentation. The accuracy of DXCOREX was established in studies performed with 13 proteins for which both high-resolution structures and experimental data were available. The DXCOREX-calculated and experimental data for each protein was highly correlated. We then employed correlation analysis of DXCOREX-calculated versus DXMS experimental data to assess the accuracy of a recently proposed structural model for the catalytic domain of a Ca²⁺-independent phospholipase A₂. The model’s calculated exchange behavior was highly correlated with the experimental exchange results available for the protein, supporting the accuracy of the proposed model. This method of analysis will substantially increase the precision with which experimental hydrogen exchange data can help decipher challenging questions regarding protein structure and dynamics.     

Improvement of thermal stability of EPDM by radiation cross-linking for space applications

Journal of Thermal Analysis and Calorimetry - The investigation of radiation effects on ethylene–propylene–diene terpolymer (EPDM) loaded with trifunctional monomer (trimethylolpropane...     

Light scattering from a nematic monodomain in an electric field Twist elastic constant and viscosity coefficient of nematic polymer-solvent mixtures

The light scattering technique was used to investigate the viscoelastic parameters characterizing director twist distortions in miscible nematic mixtures of 5CB (pentacyanobiphenyl) with two side chain liquid crystal polymers and a main chain liquid crystal polymer. By applying an AC electric field to homeotropically-aligned nematic monodomains of the mixtures, the field-dependent scattering intensities and director orientation fluctuation relaxation rates yield, respectively, the twist elastic constant K₂₂ and viscosity coefficient γ₁. The results directly demonstrate that the addition of liquid crystal polymers causes substantial decreases of the relaxation rates for dynamic light scattering from the twist mode and these changes are due to small decreases in K₂₂ coupled with large increases in γ₁. The decrements in K₂₂ are comparable for both side chain and main chain liquid crystal polymers. The relative increase in the twist viscosity for the side chain liquid crystal polymers is much smaller than those of main chain polymers. A theoretical model is used to qualitatively interpret the difference between the viscous behaviour of the twist mode for both side chain and main chain liquid crystal polymers in a nematic solvent.     

Acceleration of the single electron transfer–degenerative chain transfer mediated living radical polymerization (SET–DTLRP) of vinyl chloride in water at 25 °C

The accelerated single electron transfer–degenerative chain transfer mediated living radical polymerization (SET–DTLRP) of vinyl chloride (VC) in H₂O/tetrahydrofuran (THF) at 25 °C is reported. This process is catalyzed by sodium dithionite (Na₂S₂O₄)‐sodium bicarbonate (NaHCO₃). Electron transfer cocatalysts (ETC) 1,1′‐dialkyl‐4,4′‐bipyridinum dihalides or alkyl viologens were also employed in this polymerization. The resulting poly(vinyl chloride) (PVC) has a number‐average molecular weight (M_n) = 2,000–12,000, no detectable amounts of structural defects, and both active chloroiodomethyl and inactive chloromethyl chain ends. The molecular weight distribution of PVC obtained is M_w/M_n = 1.5. The surface active agents afford the final polymers as a powder and provide an acceleration of the rate of polymerization. The role of ETC is to accelerate the single electron transfer (SET) step, whereas THF enhances the degenerative chain transfer (DT) step. © 2004 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 42: 6364–6374, 2004