Precise mass measurement of a double-stranded 500 base-pair (309 kDa) polymerase chain reaction product by negative ion electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

Electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICRMS) has been used to determine the mass of a double-stranded 500 base-pair (bp) polymerase chain reaction (PCR) product with an average theoretical mass of the blunt-ended (i.e. unadenylated) species of 308 859.35 Da. The PCR product was generated from the linearized bacteriophage Lambda genome which is a double-stranded template. Utilization of ethanol precipitation in tandem with a rapid microdialysis step to purify and desalt the PCR product was crucial to obtain a precise mass measurement. The PCR product (0.8 pmol/μL) was electrosprayed from a solution containing 75% acetonitrile, 25 mM piperidine, and 25 mM imidazole and was infused at a rate of 200 nL/min. The average molecular mass and the corresponding precision were determined using the charge-states ranging from 172 to 235 net negative charges. The experimental mass and corresponding precision (reported as the 95% confidence interval of the mean) was 309 406 +/- 27 Da (87 ppm). The mass accuracy was compromised due to the fact that the PCR generates multiple products when using Taq polymerase due to the non-template directed 3'-adenylation. This results in a mixture of three PCR products with nearly identical mass (i.e. blunt-ended, mono-adenylated and di-adenylated) with unknown relative abundances that were not resolved in the spectrum. Thus, the experimental mass will be a weighted average of the three species which, under our experimental conditions, reflects a nearly equal concentration of the mono- and di-adenylated species. This report demonstrates that precise mass measurements of PCR products up to 309 kDa (500 bp) can be routinely obtained by ESI-FTICR requiring low femtomole amounts. Copyright 1999 John Wiley & Sons, Ltd.     

Catalytic Transfer Hydrogenation and Acid Reactions of Furfural and 5-(Hydroxymethyl)furfural over Hf-TUD-1 Type Catalysts

Heterogeneous catalysis, which has served well the petrochemical industry, may valuably contribute towards a bio-based economy by sustainably enabling selective reactions to renewable chemicals. Carbohydrate-containing matter may be obtained from various widespread sources and selectively converted to furanic platform chemicals: furfural (Fur) and 5-(hydroxymethyl)furfural (Hmf). Valuable bioproducts may be obtained from these aldehydes via catalytic transfer hydrogenation (CTH) using alcohols as H-donors under relatively moderate reaction conditions. Hafnium-containing TUD-1 type catalysts were the first of ordered mesoporous silicates explored for the conversion of Fur and Hmf via CTH/alcohol strategies. The materials promoted CTH and acid reactions leading to the furanic ethers. The bioproducts spectrum was broader for the reaction of Fur than of Hmf. A Fur reaction mechanism based on literature data was discussed and supported by kinetic modelling. The influence of the Hf loading and reaction conditions (catalyst load, type of alcohol H-donor, temperature, initial substrate concentration) on the reaction kinetics was studied. The reaction conditions were optimized to maximize the yields of 2-(alkoxymethyl)furan ethers formed from Fur; up to 63% yield was reached at 88% Fur conversion, 4 h/150 °C, using Hf-TUD-1(75), which was a stable catalyst. The Hf-TUD-1(x) catalysts promoted the selective conversion of Hmf to bis(2-alkoxymethyl)furan; e.g., 96% selectivity at 98% Hmf conversion, 3 h/170 °C for Hf-TUD-1(50).     

Phenoxy-benzothiadiazole dyes: Synthesis,photophysical properties and preliminary application in OLEDs

The synthesis of a phenoxy-benzothiadiazole (BTD) derivative is reported for the first time. This derivative was employed as an intermediate in the obtention of two novel highly fluorescent aryl-phenoxy-BTD dyes. Their photophysical properties were evaluated in solution and the results indicate a strong intramolecular charge transfer (ICT) character in the excited state. The luminophore 3a, possessing a donor-BTD-phenoxide architecture, exhibits superior fluorescence quantum yield (0.67) than the designed acceptor-BTD-phenoxide dye (0.06). After electrochemical and photoluminescence characterization of thin films of 3a, an OLED with the configuration ITO/PEDOT:PSS/3a/TPBi/LiF/Al was constructed. This device displayed a green emission centered at 547?nm, with CIE coordinates of (0.40, 0.55). For comparison, an OLED using a previously reported luminescent BTD-pyridyl derivative was also constructed. The OLED made with the phenoxy-BTD derivative operated using less current density and led to higher irradiance and electrical stability, indicating the high potential of ArO-BTD dyes for future application in electroluminescent devices.     

Interactions between n-octyl and n-nonyl beta-D-glucosides and alpha- and beta-cyclodextrins as seen by self-diffusion NMR

In this work (1)H NMR self-diffusion experiments have been performed to determine the self-diffusion coefficients of n-octyl beta-d-glucoside and n-nonyl beta-d-glucoside in alpha-cyclodextrin and beta-cyclodextrin solutions at 25 degrees C. Two questions are addressed. The first concerns the general influence on nonionic surfactant transport properties when cyclodextrins are present in solution. The second question concerns the influence of surfactant-chain length and cyclodextrin cavity volume on the association constant. The self-diffusion coefficients of the alkyl glucosides, in cyclodextrin-containing solutions, depend on the cyclodextrin concentration on account of the formation of complexes. The cyclodextrin diffusion is only mildly influenced, since the complex has similar diffusion coefficients as the free cyclodextrin. There are some obstruction effects at the highest surfactant concentrations which decrease the cyclodextrin diffusion. A set of equations to model the self-diffusion coefficients of the surfactant and cyclodextrin was developed and is presented. On the basis of such equations, properties such as association constants, and micelle and complex diffusion coefficients can be estimated.     

Transport of solutes through calix[4]pyrrole-containing cellulose acetate films

Films of cellulose acetate containing different concentrations of meso-octamethyl-porphyrinogen (calix[4]pyrrole) were prepared and characterized using UV-vis and FTIR spectroscopy, DSC and SEM. Incorporation of calix[4]pyrrole into cellulose acetate leads to a decrease in the degree of hydrophilicity of the polymeric matrix. However, a slight increase in the percentage of water uptake of the polymer is found with an increase of the initial amount of calix[4]pyrrole in the composite composition. This effect can be related to the plasticizing effect that the calix[4]pyrrole provokes in the cellulose acetate. A comparative study of transport parameters of oxygen and some non-associated electrolytes (sodium, copper(II) and nickel chlorides) was carried out. The diffusion coefficients of molecular oxygen through cellulose acetate films decrease with an increase of the concentration of calix[4]pyrrole in the composite films. The transport (diffusion and permeation) of the above mentioned electrolytes through a set of composite films shows a decrease of permeability and diffusion coefficients with an increase of calix[4]pyrrole concentration. Such behaviour is typical of systems where interactions between the polymer and diffusing species occur. However, from the analysis of the distribution coefficient, it was found that those interactions are only dependent on the calix[4]pyrrole content for 2:1 electrolytes.     

Radio-tracer methods for studying speciation in natural waters

Radio-tracer experiments have shown that antimony, mercury and zinc interact to form complexes with humic and/or fulvic acids, whose molar masses can be estimated by gel chromatography. Sb(III) and (V) humates are stable in the pH range 7–11, but are largely dissociated below pH 4; humic acid does not reduce Sb(V) to Sb(III) in solution. Mercury forms a strong complex with humic+fulvic acids. Zinc forms complexes with both humic acids and glycine, and the humic acid complex has similar elution behaviour on dextran gel to a fraction from river water equilibrated with⁶⁵Zn. At least one other form of zinc, in addition to Zn²⁺, occurs in this river.     

Quasi-Complete Solvation of C-Phenylcalix[4]resorcinarene in the Crystalline State. Single Crystal X-ray Diffraction Study

The crystal structure of C-phenylcalix[4]resorcinarene in a very solvated environment (DMSO) has been determined. The asymmetric unit contains nine molecules of DMSO and one molecule of water for each molecule of the resorcinarene. The C-phenylcalix[4]resorcinarene adopts an approximate C2_v symmetry (boat conformation, also known as flattened-cone conformation) in which two opposite resorcinol rings are almost parallel, while the other two are nearly coplanar.4,6,10,12,16,18,22,24-Octahydroxy-2,8,14,20-tetraphenyl-calix(4) arene.Supplementary data related to this article are deposited with the British Library as Supplementary Publication No. 82308 (3 pages).     

Electrochemical characterization of carbon paste electrodes modified with MgZnGa and ZnGaAl hydrotalcite-like compounds

Two hydrotalcite-like compounds (HTs) were synthesized by coprecipitation. The electrochemical behavior of MgZnGa ([Mg_0.58 Zn_0.17Ga_0.25 (OH)₂] (CO₃)^2? _0.125 1.5 H₂O) and ZnGaAl ([Zn_0.75Ga_0.19 Al_0.06 (OH)₂] (CO₃)^2? _0.125·1.5 H₂O) Hydrotalcite-like compounds (HTs) was studied in NaOH at different concentrations. Voltammetric and chronoamperometric studies were performed to identify oxidation and reduction processes and the effect of the cations in total reactivity. Electrocatalytic effect of HTs on hydroxide electrochemical oxidation shows better performance of MgZnGa; this is apparently due to the presence of Mg and a greater amount of Ga³⁺ in the lattice of this HT. As far as reduction is concerned, Zn(II) reduction process is observed within the lattices of both HTs and is influenced by both the amount of OH^? in the solution and the potential which the previous oxidation has been performed.