Role of steric effects in protein-directed enediyne cycloaromatization of neocarzinostatin

The antibiotic neocarzinostatin comprises a carrier protein with a well-defined cavity for accommodating an active enediyne chromophore. The protein has two disulfides, one (Cys(37)-Cys(47)) lies on the cavity bottom and the other (Cys(88)-Cys(93)) in a constrained short loop. When the chromophore is not bound to the protein, a thiol-induced cycloaromatization of the enediyne into a tetrahydroindacene derivative is responsible for the potent antitumor activity. When it is protein-bound, the protein diverts the cycloaromatization pathway to form a distinct hydroxyisochromene-type product. How the protein directs the enediyne chemistry is an interesting puzzle, and various suggestions have been proposed in the past. We screened more than fifty thiols and manipulated conditions to locate reaction features and search for factors that could influence the protein directing strength. Thiol- and oxygen-concentration-dependence studies suggested that disulfides, which maintain the steric rigidity of the protein, could play a key role in diverting the cycloaromatization pathway. For direct proofs, we made mutations at each of the two disulfides by replacing sulfur atoms with oxygen. Circular dichroism and two-dimensional NMR spectroscopy studies suggested that the mutations changed neither the protein conformation nor the ligand interactions. Analyses of the thiol-induced cycloaromatization revealed that rupture of Cys(37)-Cys(47) made the protein almost completely lose its chemical directing ability, whereas rupture of Cys(88)-Cys(93) had only a minor influence. The results demonstrated that the steric rigidity of the binding cavity, but not necessary the whole protein, played an important role in the protein-directed mechanism.     

Role of 5-thio-(2-nitrobenzoic acid)-capped gold nanoparticles in the sensing of chromium(vi): remover and sensor

This study describes a simple, rapid method for sensing Cr(vi) using 5-thio-(2-nitrobenzoic acid) modified gold nanoparticles (TNBA-AuNPs) as a remover for Cr(iii) and as a sensor for Cr(vi). We discovered that TNBA-AuNPs were dispersed in the presence of Cr(vi), whereas Cr(iii) induced the aggregation of TNBA-AuNPs. Due to this phenomenon, TNBA-AuNPs can be used as a sorbent material for the removal of >90% Cr(iii), without removing Cr(vi). After centrifuging a solution containing Cr(iii), Cr(vi), and TNBA-AuNPs, Cr(iii) and Cr(vi) were separately present in the precipitate and supernatant. In other words, TNBA-AuNPs are capable of separating a mixture of Cr(iii) and Cr(vi). The addition of ascorbic acid to the supernatant resulted in a reduction of Cr(vi) to Cr(iii), driving the aggregation of TNBA-AuNPs. The selectivity of this approach is more than 1000-fold for Cr(vi) over other metal ions. The minimum detectable concentration of Cr(vi) was 1 μM using this approach. Inductively coupled plasma mass spectrometry provided an alternative for the quantification of Cr(iii) and Cr(vi) after a mixture of Cr(iii) and Cr(vi) had been separated by TNBA-AuNPs. The applicability of this approach was validated through the analysis of Cr(vi) in environmental water samples.     

The potential of tetrandrine as a protective agent for ischemic stroke

Stroke is one of the leading causes of mortality, with a high incidence of severe morbidity in survivors. The treatment to minimize tissue injury after stroke is still unsatisfactory and it is mandatory to develop effective treatment strategies for stroke. The pathophysiology of ischemic stroke is complex and involves many processes including energy failure, loss of ion homeostasis, increased intracellular calcium level, platelet aggregation, production of reactive oxygen species, disruption of blood brain barrier, and inflammation and leukocyte infiltration, etc. Tetrandrine, a bisbenzylisoquinoline alkaloid, has many pharmacologic effects including anti-inflammatory and cytoprotective effects. In addition, tetrandrine has been found to protect the liver, heart, small bowel and brain from ischemia/reperfusion injury. It is a calcium channel blocker, and can inhibit lipid peroxidation, reduce generation of reactive oxygen species, suppress the production of cytokines and inflammatory mediators, inhibit neutrophil recruitment and platelet aggregation, which are all devastating factors during ischemia/reperfusion injury of the brain. Because tetrandrine can counteract these important pathophysiological processes of ischemic stroke, it has the potential to be a protective agent for ischemic stroke.     

Synthesis and antiproliferative evaluation of 2,3-diarylquinoline derivatives

A number of 2,3-diarylquinoline derivatives were synthesized and evaluated for antiproliferative activities against the growth of six cancer cell lines including human hepatocellular carcinoma (Hep G2 and Hep 3B), non-small cell lung cancer (A549 and H1299), and breast cancer (MCF-7 and MDA-MB-231) cell lines. The preliminary results indicated that 6-fluoro-2,3-bis{4-[2-(piperidin-1-yl)ethoxy]phenyl}quinoline (16b) was one of the most active compounds against the growth of Hep 3B, H1299, and MDA-MB-231 with a GI(50) value of 0.71, 1.46, and 0.72 μM respectively which was more active than tamoxifen. Further investigations have shown that 16b induced cell cycle arrest at G2/M phase followed by DNA fragmentation via an increase in the protein expression of Bad, Bax and decrease in Bcl-2, and PARP which consequently cause cell death.     

Transimination reactions in [b-3C-im][NTf2] ionic liquid

Compared to conventional molecular solvents, the ionic liquid [b-3C-im][NTf(2)] was found to promote transimination reactions with up to ～100-fold rate enhancement. This rate effect observed at ambient temperature might be explained by the fact that the ionic liquid displays weak Lewis acidity with very low, if any, nucleophilicity and its imidazolium cation is expected to interact by associating with, and thus electrophilically activating, the C=N bond of the starting imine, leading to increased stabilization of the polar, charged intermediate species and ultimately, rapid product formation. Moreover, the presence of 1 mol% Sc(OTf)(3) in [b-3C-im][NTf(2)] further facilitates the transimination reactions studied.     

A block coordinate gradient descent method for regularized convex separable optimization and covariance selection

We consider a class of unconstrained nonsmooth convex optimization problems, in which the objective function is the sum of a convex smooth function on an open subset of matrices and a separable convex function on a set of matrices. This problem includes the covariance selection problem that can be expressed as an ℓ ₁-penalized maximum likelihood estimation problem. In this paper, we propose a block coordinate gradient descent method (abbreviated as BCGD) for solving this class of nonsmooth separable problems with the coordinate block chosen by a Gauss-Seidel rule. The method is simple, highly parallelizable, and suited for large-scale problems. We establish global convergence and, under a local Lipschizian error bound assumption, linear rate of convergence for this method. For the covariance selection problem, the method can terminate in O(n³/e){O(n^3/\epsilon)} iterations with an e{\epsilon}-optimal solution. We compare the performance of the BCGD method with the first-order methods proposed by Lu (SIAM J Optim 19:1807–1827, 2009; SIAM J Matrix Anal Appl 31:2000–2016, 2010) for solving the covariance selection problem on randomly generated instances. Our numerical experience suggests that the BCGD method can be efficient for large-scale covariance selection problems with constraints.     

Colorimetric assay for cyanide and cyanogenic glycoside using polysorbate 40-stabilized gold nanoparticles

This study describes a simple method for the selective and sensitive detection of cyanide and endogenous biological cyanide using polysorbate 40-stabilized gold nanoparticles.     

Synthesis CdSe(x)S(1-x) core/shell type quantum dots via one injection method

The photoluminescence quantum yield (PL-QY) of ternary colloidal CdSe(x)S(1-x) quantum dots (QDs), which were prepared by a one-injection method, enhances with increasing S content. The possible enhancement mechanism was explored by structural analysis via X-ray absorption near edge structure (XANES) and extended X-ray absorption fine structure (EXAFS). Both found that the enhancement of PL-QY of ternary CdSe(x)S(1-x) QDs strongly correlated with self-formed core/shell conformation in the non-coordination solution.     

Composition and antimicrobial activities of the leaf essential oil of Machilus kusanoi from Taiwan

The hydrodistillated leaf essential oil of Machilus kusanoi was analyzed to determine its composition and yield. Twenty-three compounds were identified, the main components being beta-caryophyllene (23.3%), beta-eudesmol (17.1%), alpha-terpineol (16.0%), n-dodecanal (14.2%), and n-decanal (10.4%). Sesquiterpene hydrocarbons (28.1%) and non-terpenoids (25.0%) were the predominant groups of compounds. The leaf oil exhibited excellent antimicrobial and anti-wood-decay fungal activities.     

Interaction parameters of polystyrene-polyisoprene-toluene systems at 45°c from gel permeation chromatography

Equilibrium phase diagrams of narrow molecular weight distribution samples of polystyrene and polyisoprene in the presence of toluene at 45°C and 1 atm pressure were established by means of gel permeation chromatography. The polymer-polymer interaction parameter was evaluated on the basis of the Flory-Huggins approach. The influence of polymer molecular weight and polymer-solvent interaction parameters on (i) the shape and location of the binodal curve, (ii) the location of the critical point, and (iii) the polymer-polymer interaction parameter was investigated.