Sensitivity of polar solvation dynamics to the secondary structures of aqueous proteins and the role of surface exposure of the probe

The structure and dynamics of water around a protein is expected to be sensitive to the details of the adjacent secondary structure of the protein. In this article, we explore this sensitivity by calculating both the orientational dynamics of the surface water molecules and the equilibrium solvation time correlation function of the polar amino acid residues in each of the three helical segments of the protein HP-36, using atomistic molecular dynamics simulations. The solvation dynamics of polar amino acid residues in helix-2 is found to be faster than that of the other two helices (the average time constant is smaller by a factor of 2), although the interfacial water molecules around helix-2 exhibit much slower orientational dynamics than that around the other two helices. A careful analysis shows that the origin of such a counterintuitive behavior lies in the dependence of the solvation time correlation function on the surface exposure of the probe-the more exposed is the probe, the faster the solvation dynamics. We discuss that these results are useful in explaining recent solvation dynamics experiments.     

Highly efficient water promoted allylation and propargylation of arylepoxides via rearrangement-carbonyl addition

A simple and highly efficient one-pot procedure for allylation and propargylation of arylepoxides has been developed. A combination of SnCl₂ and catalytic Pd(0) or Pd(II) promotes the reaction of organic halides and epoxides in DMSO with controlled water addition, leading to the regioselective formation of the corresponding homoallyl and homopropargyl alcohols in good yields.     

A Simple Alkylative 1,2-Carbonyl Transposition of Cyclohexenones

Acid catalysed dehydration of the diols 5 , derived from the cyclohexenone 3 affords mixtures of 8 and 11 . The product ratio 8/11 , although strongly dependent on both the reaction conditions and the substituent R, is independent of the diol configuration; this indicates a cationic intermediate 6 . Conditions were found, which allow the sequence A → B → C → D (Scheme 2) to be applied to the syntheses of the enones 8, 21 and 25 in fair to good yields from the corresponding cyclohexenones 3, 18 and 22 .     

High-Performance Thin-Layer Chromatographic Determination of Satranidazole in its Dosage Form

JPC – Journal of Planar Chromatography – Modern TLC - A high-performance thin-layer chromatographic method has been developed for determination of a new antiamoebic drug, satranidazole,...     

Counterion binding behaviour of micelles of sodium dodecyl sulphate and bile salts in the pure state,in mutually mixed states and mixed with a nonionic surfactant

The counterion binding behaviour of micelles of sodium dodecyl sulphate (SDS) and several bile salts in the pure state have been studied, as well as in mutually mixed states, and in a mixed state with polyoxyethylene sorbitan monolaurate (PSML) as a nonionic surfactant. Electrochemical measurements have shown no counterion binding by the pure bile salt micelles and their mixtures with PSML; they can bind counterions when mixed with SDS, whereas the surfactant anions of SDS micelles bind counterions in the pure state and/or in mixed states with PSML. In the SDS-PSML and SDS-bile salts combinations, the counterion association is decreased by the increased proportions of the second component. The extent of counterion binding by the different systems is presented.     

A New Bismuth Nitrate–Catalyzed Electrophilic Substitution of Indoles with Carbonyl Compounds Under Solvent-Free Conditions

An expeditious synthetic method for the preparation of bis(indollyl)methane derivatives has been developed through a bismuth nitrate-catalyzed reaction of indole with various carbonyl compounds in mortar and pastle under solvent-free conditions.     

Bi-level thresholding using PSO, Artificial Bee Colony and MRLDE embedded with Otsu method

Image segmentation is required to be studied in detail some particular features (areas of interest) of a digital image. It forms an important and exigent part of image processing and requires an exhaustive and robust search technique for its implementation. In the present work we have studied the working of MRLDE, a newly proposed variant of differential evolution combined with Otsu method, a well known image segmentation method for bi-level thresholding. The proposed variant, termed as Otsu+MRLDE, is tested on a set of 10 images and the results are compared with Otsu method and some other well known metaheuristics.     

Peptide‐poly(ε‐caprolactone) biohybrids by grafting‐from ring‐opening polymerization: Synthesis,aggregation, and crystalline properties

Well‐defined peptide‐poly(ε‐caprolactone) (Pep‐PCL) biohybrids were successfully synthesized by grafting‐from ring‐opening polymerization (ROP) of ε‐caprolactone (CL) using designed amine‐terminated sequence‐defined peptides as macroinitiators. MALDI‐TOF‐MS and ¹H NMR analyses confirmed the successful attachment of peptide to the PCL chain. The gel permeation chromatography (GPC) measurement showed that the Pep‐PCL biohybrids with controllable molecular weights and low polydispersities (PDI <1.5) were obtained by this approach. The aggregation of Pep‐PCL hybrid molecules in THF solution resulted in the formation of micro/nanospheres as confirmed through FESEM, TEM, and DLS analyses. The circular dichroism study revealed that the secondary structure of peptide moiety was changed in the peptide‐PCL biohybrids. The crystallization and melting behavior of Pep‐PCL hybrids were somewhat changed compared with that of neat PCL of comparable molecular weight as revealed by DSC and XRD measurements. In Pep‐PCL biohybrids, extinction rings were observed in the PCL spherulites, in contrast with the normal spherulite morphology of the neat PCL. There was a substantial decrease (4–5 folds) in the spherulitic growth rate after the incorporation of peptide moiety at the end of PCL chain as measured by polarizing optical microscopy. Pseudomonas lipase catalyzed enzymatic degradation was studied for Pep‐PCL hybrids and neat PCL. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012