Novel applications of the modified polonovski reaction - VII preparation of isoquinuclidines

The first successful preparations of the biochemically important isoquinuclidine ring system by the modified Polonovski reaction are described.     

X‐tended target projection (XTP)—comparison with orthogonal partial least squares (OPLS) and PLS post‐processing by similarity transformation (PLS + ST)

Target projection (TP) also called target rotation (TR) was introduced to facilitate interpretation of latent‐variable regression models. Orthogonal partial least squares (OPLS) regression and PLS post‐processing by similarity transform (PLS + ST) represent two alternative algorithms for the same purpose. In addition, OPLS and PLS + ST provide components to explain systematic variation in X orthogonal to the response. We show, that for the same number of components, OPLS and PLS + ST provide score and loading vectors for the predictive latent variable that are the same as for TP except for a scaling factor. Furthermore, we show how the TP approach can be extended to become a hybrid of latent‐variable (LV) regression and exploratory LV analysis and thus embrace systematic variation in X unrelated to the response. Principal component analysis (PCA) of the residual variation after removal of the target component is here used to extract the orthogonal components, but X‐tended TP (XTP) permits other criteria for decomposition of the residual variation. If PCA is used for decomposing the orthogonal variation in XTP, the variance of the major orthogonal components obtained for OPLS and XTP is observed to be almost the same, showing the close relationship between the methods. The XTP approach is tested and compared with OPLS for a three‐component mixture analyzed by infrared spectroscopy and a multicomponent mixture measured by near infrared spectroscopy in a reactor. Copyright © 2008 John Wiley & Sons, Ltd.     

Comparison of epimeric methyl lithocholate and methyl iso-lithocholate molecules: single crystal X-ray structure of methyl lithocholate, ab initio HF/6-31G* optimized structures and experimental and calculated DFT/B3LYP C NMR chemical shifts

¹³C NMR chemical shifts have been measured and assigned for epimeric methyl 3α/β-hydroxy-5β-cholan-24-oates (methyl lithocholate [3α-OH epimer] and methyl iso-lithocholate [3β-OH epimer]). Their molecular dynamics simulations suggest that for both epimers there exists two predominant gas phase conformations, which have been further forwarded for ab initio/HF optimizations and DFT/GIAO based ¹³C NMR chemical shift calculations. Excellent linear relationships have been observed between experimental and calculated ¹³C NMR chemical shifts for both epimers. For methyl lithocholate (MeLC), the other minimum energy conformation equates very well with the single crystal X-ray structure (orthorhombic, space group P2₁2₁2₁, unit cell ). The crystalline packing of MeLC consists of continuous parallel intermolecular hydrogen bonded [3α-OH?OC24] head-to-tail polymeric chains, which are further cross-linked by many simultaneous weak C(sp³)H?O-type of interactions.     

Disposable roll-to-roll hot embossed electrophoresis chip for detection of antibiotic resistance gene mecA in bacteria

We present a high-throughput roll-to-roll (R2R) manufacturing process for foil-based polymethyl methacrylate (PMMA) chips of excellent optical quality. These disposable, R2R hot embossed microfluidic chips are used for the identification of the antibiotic resistance gene mecA in Staphylococcus epidermidis. R2R hot embossing is an emerging manufacturing technology for polymer microfluidic devices. It is based on continuous feeding of a thermoplastic foil through a pressurized area between a heated embossing cylinder and a blank counter cylinder. Although mass fabrication of foil-based microfluidic chips and their use for biological applications were foreseen already some years ago, no such studies have been published previously.     

On the interaction of HBT with pulp lignin during mediated laccase delignification—a study using fractionated pyrolysis-GC/MS

An analytical method using fractionated pyrolysis-gas chromatography/mass spectrometry (Py-GC/MS) was developed and applied for characterizing the type of interaction between 1-hydroxybenzotriazole (HBT)-mediator and pulp lignin in laccase delignification of pulp. In fractionated pyrolysis, the sample is pyrolyzed at progressively increasing temperatures in order to study particular fractions of the sample and to minimize secondary pyrolysis effects. This makes it possible to determine whether a certain pyrolysis product originates from one chemical moiety or different chemical moieties in one molecule. In the present method, samples were fractionated by thermal desorption at 200 °C followed by pyrolysis at progressively increasing temperatures from 320 to 800 °C. The products formed in each fraction were separated in a capillary GC column and detected and identified using MS. The type of interaction between HBT and pulp lignin was studied by following the formation of nitrogen-containing products during fractionated pyrolysis of a residual lignin isolated from laccase/HBT-treated oxygen-delignified softwood kraft pulp. This residual lignin was found to contain approximately 2% HBT residue. Most (87%) of this residue was covalently linked to the residual lignin. The results also strongly suggest that the HBT residue is present in two chemically different forms.     

Cellulose crystallinity and ordering of hemicelluloses in pine and birch pulps as revealed by solid-state NMR spectroscopic methods

Solid-state ¹³C NMR spectroscopy was used to determine the degree of cellulose crystallinity (CrI) in kraft, flow-through kraft and polysulphide–anthraquinone (PS–AQ) pulps of pine and birch containing various amounts of hemicelluloses. The applicability of acid hydrolysis and the purely spectroscopic proton spin-relaxation based spectral edition (PSRE) method to remove the interfering hemicellulose signals prior to the determination of CrI were also compared. For softwood pulps, the spectroscopic removal of hemicelluloses by PSRE was found to be more efficient than the removal of hemicelluloses by acid hydrolysis. In addition to that, the PSRE method also provides information on the associations between cellulose and hemicelluloses. On the basis of the incomplete removal of xylan from the cellulose subspectra by PSRE, the deposition of xylan on cellulose fibrils and therefore an ordered ultrastructure of xylan in birch pulps was suggested. The ordered structure of xylan in birch pulps was also supported by the observed change of xylan conformation after regeneration. Similarly, glucomannan in pine pulps may have an ordered structure. According to the ¹³C CPMAS measurements conducted after acid hydrolysis, the degree of cellulose crystallinity was found to be slightly lower in birch pulps than in the pine pulps. Any significant differences in cellulose crystallinity were not found between the pulps obtained by the various pulping methods. Only in pine PS–AQ pulp, the degree of cellulose crystallinity may be slightly lower than in the kraft pulps containing less hemicelluloses.     

Preparation, thermal stability and luminescence properties of selected rare earth oxycarbonates

A comparative TG and DTG study of the preparation and thermal stability of selected rare earth oxycarbonates, (REO)₂CO₃ (RE = La and Gd), shows that the ease of formation as well as the stability of these compounds decreases strongly with increasing atomic number of the host cation. According to X-ray powder diffraction analyses, the RE oxycarbonates obtained as decomposition products of acetate and carbonate hydrates belong to the tetragonal IA-type. UV- and dye laser-excited luminescence studies of Eu³⁺-doped (LaO)₂CO₃ and (GdO)₂CO₃ reveal the presence of two different sites for the host cation. One of the sites resembles closely that prevailing in the tetragonal RE oxysalts, i.e. oxyhalides, oxysulphates, oxymolybdates and oxynitrates. A crystal field analysis carried out on the ⁷F₁ and ⁷F₂ level schemes according to a C_2v site symmetry confirms this hypothesis.     

On search by address computation

We study the effect of data distribution on address computation data structures for searching, as typified by the priority queue problem. We compare several techniques showing that, in contrast to sorting, neither one nor multilevel bucket methods are uniformly efficient for this task. However, an enhancement of order preserving extendible hashing is shown to behave asymptotically independently of the amount of data and its distribution. Also conclusions regarding multiattribute file structures are presented.     

Comparison of calculated DFT/B3LYP and experimental C and O NMR chemical shifts, ab initio HF/6-31G* optimised structures, and single crystal X-ray structures of some substituted methyl 5β-cholan-24-oates

Single crystal X-ray structures (monoclinic space group P2₁) for methyl 3-oxo-5β-cholan-24-oate and methyl 3,12-dioxo-5β-cholan-24-oate have been solved and compared with HF/6-31G* optimised structures. In the crystalline packings the side chains are connected with weak OC(sp³)HO-type of interactions between C25–H and C24–O–C25 and the keto ends with weak C(sp³)HO=C-type of interactions between C4–H and O=C3. The orientations of the side chains, which steric configurations are of great importance to the biological activity of the molecules, are compared with the experimental structure of methyl 3-hydroxy-5β-cholan-24-oate. Probable reasons for the observed differences are discussed. In addition, ¹³C and ¹⁷O NMR chemical shifts of methyl 3-oxo-5β-cholan-24-oate and methyl 3,12-dioxo-5β-cholan-24-oate as well as the epimeric methyl 3-hydroxy-5β-cholan-24-oate and methyl 3β-hydroxy-5β-cholan-24-oate have been calculated (DFT/B3LYP/6-311G*) and compared with the experimental values by linear regression analyses. In general, the correspondence between the theoretical and experimental parameters is good or excellent.