Temperature-enhanced association of proteins due to electrostatic interaction: a coarse-grained simulation of actin-myosin binding

Association of protein molecules constitutes the basis for the interaction network in a cell. Despite its fundamental importance, the thermodynamic aspect of protein-protein binding, particularly the issues relating to the entropy change upon binding, remains elusive. The binding of actin and myosin, which are vital proteins in motility, is a typical example, in which two different binding mechanisms have been argued: the binding affinity increases with increasing temperature and with decreasing salt-concentration, indicating the entropy-driven binding and the enthalpy-driven binding, respectively. How can these thermodynamically different binding mechanisms coexist? To address this question, which is of general importance in understanding protein-protein bindings, we conducted an in silico titration of the actin-myosin system by molecular dynamics simulation using a residue-level coarse-grained model, with particular focus on the role of the electrostatic interaction. We found a good agreement between in silico and in vitro experiments on the salt-concentration dependence and the temperature dependence of the binding affinity. We then figured out how the two binding mechanisms can coexist: the enthalpy (due to electrostatic interaction between actin and myosin) provides the basal binding affinity, and the entropy (due to the orientational disorder of water molecules) enhances it at higher temperatures. In addition, we analyzed the actin-myosin complex structures observed during the simulation and obtained a variety of weak-binding complex structures, among which were found an unusual binding mode suggested by an earlier experiment and precursor structures of the strong-binding complex proposed by electron microscopy. These results collectively indicate the potential capability of a residue-level coarse-grained model to simulate the association-dissociation dynamics (particularly for transient weak-bindings) exhibited by larger and more complicated systems, as in a cell.     

Lipase-embedded silica nanoparticles with oil-filled core-shell structure: stable and recyclable platforms for biocatalysts

Lipase enzyme was embedded within silica nanoparticles with oil-filled core-shell structure. The enzyme embedded within such architecture retained all of its activity and showed high catalytic performance both in water and in organic media with optimal stability and recyclability.     

Kinetic energy analysis of atomic multiplets

Summary A kinetic energy analysis of total energy differences in atomic multiplets arising fromf ^m (m=2–12) electronic configurations is performed within the nonrelativistic restricted Hartree-Fock framework. For these 1290 multiplets of 22 lanthanoid (Ce to Er) and actinoid (Th to Fm) atoms, a very good linear correlation between the total energy difference and the kinetic energy difference of the outermostf-electrons is found. The present results, together with our previous ones for the multiplets arising froms ^mpⁿ (m=1,2;n=2–4) ands ^mdⁿ (m=0–2;n=2–8) electronic configurations, demonstrate that the kinetic energy difference of electrons in open subshells is an excellent predictor of total energy differences among atomic multiplet states.     

Gold nanoparticle-catalyzed environmentally benign deoxygenation of epoxides to alkenes

We have developed a highly efficient and green catalytic deoxygenation of epoxides to alkenes using gold nanoparticles (NPs) supported on hydrotalcite [HT: Mg(6)Al(2)CO(3)(OH)(16)] (Au/HT) with alcohols, CO/H(2)O or H(2) as the reducing reagent. Various epoxides were selectively converted to the corresponding alkenes. Among the novel metal NPs on HT, Au/HT was found to exhibit outstanding catalytic activity for the deoxygenation reaction. Moreover, Au/HT can be separated from the reaction mixture and reused with retention of its catalytic activity and selectivity. The high catalytic performance of Au/HT was attributed to the selective formation of Au-hydride species by the cooperative effect between Au NPs and HT.