Synthesis and single-crystal X-ray diffraction studies of 1-β-D-ribofuranosyl-1,2,4-triazole-3-sulfonamide and certain related nucleosides

1-β-D-Ribofuranosyl- 21 , 1-(2-deoxy-β-D-erytftro-pento fur anosyl)- 27 and 1-β-D-arabinofuranosyl- 29 derivatives of 1,2,4-triazole-3-sulfonamide ( 19 ) have been prepared. Glycosylation of the silylated 19 with 1,2,3,5-tetra-0-acetyl-β-D-ribofuranose ( 5 ) in the presence of trimethylsilyl triflate gave the corresponding blocked nucleoside ( 20 ), which on ammonolysis afforded 1-β-D-ribofuranosyl-1,2,4-triazole-3-sulfonamide ( 21 ). Stereospecific glycosylation of the sodium salt of 19 with either 1-chloro-2-deoxy-3,5-di-O-p-toluoyl-α-D-erythro-pentofuranose ( 22 ) or 1-chloro-2,3,5-tri-0-benzyl-α-D-arabinofuranose ( 23 ) provided the corresponding protected nucleosides 26 and 28. Deprotection of 26 and 28 furnished 1-(2-deoxy-β-D-erythro-pentofuranosyl)-1,2,4-triazole-3-sulfonamide ( 27 ) and 1-β-D-arabinofuranosyl-1,2,4-triazole-3-sulfonamide ( 29 ), respectively. 2-0-D-Ribofuranosyl-1,2,4-triazole-3(4H)-thione ( 7 ) and 4-β-D-ribofuranosyl-1,2,4-triazole-3(2H)-thione ( 9 ) were also prepared utilizing either an acid catalyzed fusion of 1,2,4-triazole-3(1H,2H)-thione ( 4 ) with 5 , the reaction of 5 with silylated 4 in the presence of trimethylsilyl triflate, or by ring closure of 4-(2,3,5-tri-0-benzoyl-β-D-ribofuranosyl)thiosemicarbazide ( 10 ) with mixed anhydride and subsequent deacylation. The synthesis of 1-β-D-ribofuranosyl-3-benzylthio-1,2,4-triazole ( 15 ) has also been accomplished by the silylation procedure employing 3-benzylthio-1,2,4-triazole ( 13 ) and 5 to give 1-(2,3,5-tri-0-acetyl-β-D-ribofuranosyl)-3-benzylthio-1,2,4-triazole ( 14 ). Deacetylation of 14 furnished 15 . The structural assignments of 7, 14 and 21 were made by single-crystal X-ray diffraction analysis and their hydrogen bonding characteristics have been studied. The sulfonamido-1,2,4-triazole nucleosides are devoid of any significant antiviral or antitumor activity in cell culture.     

A photoactivated precipiton for reagent sequestration in solution-phase synthesis

Precipitons are molecular phase tags for chemical separations. They can be switched from a high-solubility to a low-solubility state to facilitate product, reagent, or catalyst isolation. This paper presents the first photoactivated precipiton and demonstrates that this precipiton is an efficient amine scavenging agent in solution-phase syntheses of amides, ureas, and imines. This approach to amine scavenging offers advantages over solid-phase scavenging methods. The amine is captured in a homogeneous medium, so the capture is much faster than seen with isocyanate resins, and only a small excess of the scavenger is required.     

Effect of the Physicochemical Properties of N,N-Disubstituted-2-phenylacetamide Derivatives on their Retention Behavior in RP-TLC

JPC – Journal of Planar Chromatography – Modern TLC - The chromatographic behavior of some N,N-disubstituted-2-phenyl-acetamide derivatives has been studied on the chemically bonded...     

Cuprous sulfide deposition method for visualization of latent fingermarks on unfired cartridge cases

A new chemical method for visualization of latent fingermarks on unfired cartridge cases is reported in this research. The method is based on two-step immersion of the cartridge cases in aqueous solutions of sulfuric acid and acidified sodium thiosulfate at room temperature. The chemical reactions that are occurring on the cartridge case's surface are leading to deposition of material in the furrows between the papillary line ridges thus visualizing the latent fingermark. The qualitative chemical composition of the as-deposited material was studied using X-ray powder diffraction analysis thus revealing that it corresponds to a low-crystalline hexagonal chalcocite phase cuprous sulfide (Cu₂S). The performance of the method was studied on fresh and aged fingermarks, and according to the results, it can visualize latent fingermarks that are up to 9 months old. The newly proposed method provides good performance considering the most important qualitative and quantitative parameters that describe each fingermark, that is, satisfactory contrast between the papillary line ridges and the background furrows, possibility of recognizing the pattern of each fingermark (arch, loop, and whorl), clarity and continuity of the friction ridges, and clarity of the second level characteristics and features. The proposed method is simple, fast, inexpensive, and reliable.     

Identification of SARS-CoV-2 Papain-like Protease (PLpro) Inhibitors Using Combined Computational Approach**

In the current pandemic, finding an effective drug to prevent or treat the infection is the highest priority. A rapid and safe approach to counteract COVID-19 is in silico drug repurposing. The SARS-CoV-2 PLpro promotes viral replication and modulates the host immune system, resulting in inhibition of the host antiviral innate immune response, and therefore is an attractive drug target. In this study, we used a combined in silico virtual screening for candidates for SARS-CoV-2 PLpro protease inhibitors. We used the Informational spectrum method applied for Small Molecules for searching the Drugbank database followed by molecular docking. After in silico screening of drug space, we identified 44 drugs as potential SARS-CoV-2 PLpro inhibitors that we propose for further experimental testing.     

Measuring the performance of quality assurance processes: pharmaceutical industry deviation management case study

This article presents experience from the practice of a successful pharmaceutical company related to design and implementation of performance measures (PMs) for deviation management linked to the analysis of impact on the production cost for the selected product. Case study focuses on PMs within good manufacturing practice (GMP) processes related to quality assurance (QA) and quality management, with the aim of complying with its future requirements proposed by the European Commission. Critical areas were identified based on data gathered from the industrial deviation database. Implementation of the suggested corrective actions showed significant improvement in terms of reducing their number for more than 50% per selected deviation category. The results obtained in the course of this practice-oriented study contribute to further improvement of deviation management in the pharmaceutical industry and performance measurement of other GMP processes. The suggested performance measurement concept and problem-solving techniques may serve both practitioners and the decision-makers within QA and quality control (QC) in order to improve their processes by implementing relevant regulatory requirements for quality management and maintain compliance.     

Boundary optimal control of the Westervelt and the Kuznetsov equations

This paper is concerned with optimal Neumann boundary control for the Westervelt and the Kuznetsov equations, which are equations of nonlinear acoustics. Specifically, functionals of tracking type with applications in noninvasive ultrasonic medical treatments are considered. Existence of optimal controls is established and first order necessary optimality conditions are derived. Stability of the minimizer with respect to perturbations in the data as well as convergence of the controls when the regularization parameter tends to zero is shown.     

Complex and chaotic oscillations in a model for the catalytic hydrogen peroxide decomposition under open reactor conditions

Numerous periodic and aperiodic dynamic states obtained in a model for hydrogen peroxide decomposition in the presence of iodate and hydrogen ions (the Bray-Liebhafsky reaction) realized in an open reactor (CSTR), where the flow rate was the control parameter, have been investigated numerically. Between two Hopf bifurcation points, different simple and complex oscillations and different routes to chaos were observed. In the region of the mixed-mode evolution of the system, the transitions between two successive mixed-mode simple states are realized by period-doubling of the initial state leading to a chaotic window in which the next dynamic state emerges mixed with the initial one. It appears in increasing proportions in concatenated patterns until total domination. Thus, with increasing flow rate the period-doubling route to chaos was obtained, whereas with decreasing flow rate the peak-adding route to chaos was obtained. Moreover, in very narrow regions of flow rates, chaotic mixtures of mixed-mode patterns were observed. This evolution of patterns repeats until the end of the mixed-mode region at high flow rates that corresponds to chaotic mixtures of one large and many small amplitude oscillations. Starting from the reverse Hopf bifurcation point and decreasing the flow rate, simple small amplitude sinusoidal oscillations were encountered and then the period-doubling route to chaos. With a further decreasing flow rate, the mixed-mode oscillations emerge inside the chaotic window.     

Three-dimensional structure of the water-insoluble protein crambin in dodecylphosphocholine micelles and its minimal solvent-exposed surface

We chose crambin, a hydrophobic and water-insoluble protein originally isolated from the seeds of the plant Crambe abyssinica, as a model for NMR investigations of membrane-associated proteins. We produced isotopically labeled crambin(P22,L25) (variant of crambin containing Pro22 and Leu25) as a cleavable fusion with staphylococcal nuclease and refolded the protein by an approach that has proved successful for the production of proteins with multiple disulfide bonds. We used NMR spectroscopy to determine the three-dimensional structure of the protein in two membrane-mimetic environments: in a mixed aqueous-organic solvent (75%/25%, acetone/water) and in DPC micelles. With the sample in the mixed solvent, it was possible to determine (>NH...OC<) hydrogen bonds directly by the detection of (h3)J(NC)' couplings. H-bonds determined in this manner were utilized in the refinement of the NMR-derived protein structures. With the protein in DPC (dodecylphosphocholine) micelles, we used manganous ion as an aqueous paramagnetic probe to determine the surface of crambin that is shielded by the detergent. With the exception of the aqueous solvent exposed loop containing residues 20 and 21, the protein surface was protected by DPC. This suggests that the protein may be similarly embedded in physiological membranes. The strategy described here for the expression and structure determination of crambin should be applicable to structural and functional studies of membrane active toxins and small membrane proteins.     

On the excess of vertex-transitive graphs of given degree and girth

We consider a restriction of the well-known Cage Problem to the class of vertex-transitive graphs, and consider the problem of finding the smallest vertex-transitive $k$-regular graphs of girth $g$. Counting cycles to obtain necessary arithmetic conditions on the parameters $(k,g)$, we extend previous results of Biggs, and prove that, for any given excess $e$ and any given degree $k\ge 4$, the asymptotic density of the set of girths $g$ for which there exists a vertex-transitive $(k,g)$-cage with excess not exceeding $e$ is 0.