Top-down analysis of protein isoprenylation by electrospray ionization hybrid quadrupole time-of-flight tandem mass spectrometry; the mouse Tgamma protein

Protein isoprenylation, an important post-translational modification with a lipid, involves the selective attachment of two types of isoprenoids, farnesyl (C15) and geranylgeranyl (C20). The isoprenoid is linked via a thioether bond to the C-terminal cysteine residue of a variety of cellular proteins, including the heterotrimeric G protein gamma-subunits. One member of the G protein family, transducin (Talpha/Tbetagamma), plays a central role in visual transduction, and the structure-function relationship has been extensively studied with purified proteins, predominantly with bovine transducin that was shown to be farnesylated at the C-terminal cysteine residue of the gamma-subunit (Tgamma). We report here the structure of the C-terminal modification of mouse Tgamma, which has not yet been elucidated owing to the low amount of protein that can be isolated from the mouse retina. Electrospray ionization mass spectrometry (ESI-MS) of the high-performance liquid chromatography (HPLC)-purified Tgamma was in good agreement with the calculated mass of the farnesylated and methylated form of mouse Tgamma (Pro1-Cys70). A 'top-down' analysis of intact Tgamma using an ESI hybrid quadrupole time-of-flight (TOF) tandem mass spectrometer provided isoprenyl-specific ions that were observed to produce ions separated by 204 Da from the conventional (unmodified) precursor ion or the C-terminal sequence ions. Such characteristic fragmentation on an isoprenoid observed in top-down analysis could be useful in general for determining the type of isoprenylation as well as probing the site of modification in the protein sequence.     

Binding thermodynamics of metal ions to HIV-1 ribonuclease H domain

Journal of Thermal Analysis and Calorimetry - Metal–protein interactions are not necessarily tight in many transient biological processes, such as cellular signaling, enzyme regulation, and...     

ChemInform Abstract: DFT Analysis of Cubane‐Type FeIr3S4 Clusters. Dinitrogen Binding and Activation at the Tetrahedral Fe Site.

ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 200 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.     

Relaxation of the topological T1 process in a two-dimensional foam

The so-called topological T1 process, during which bubbles within a foam exchange neighbours is studied. The Durand and Stone model (Phys. Rev. Lett., 97, 226101 (2006)) describes the growth of a film that is newly created during the T1 process, and also the evolution of surfactant concentration on this newly created film. Here some characteristic features of the Durand and Stone model (not previously described by Durand and Stone) are elucidated. In particular it is shown that the surfactant concentration on the newly created film is predicted to undergo an extremely rapid initial evolution, which occurs long before the film itself approaches anywhere near its final equilibrium length. Associated with this, the predicted length of the newly created film tends to exhibit an extremely rapid acceleration early on in its growth. An intermediate asymptotic analysis is developed to explain the above model predictions, by focussing on the regime when the film is several times larger than its initial length, but still several times smaller than its final length. A physical explanation is offered for these predictions in terms of slippage between material points instantaneously at the end of the newly created film, and the evolving location of the film endpoint itself: this slippage implies surfactant being transferred onto the newly created film from neighbouring films, overwhelming the amount of surfactant initially present. The implications of these predictions for the likely observations in an experimental study of the T1 process are discussed.     

Remote Estimation of the Chlorophyll Concentration of Living Trees Using Laser-induced Fluorescence Imaging Lidar

Monthly variation in chlorophyll concentration of living ginko tree leaves 65 m away from a system was remotely estimated by a laser-induced fluorescence imaging lidar. The combination of a pulsed laser and a short-time gated CCD using an image intensifier made it possible to monitor the weak fluorescence signal from the ginko tree leaves as an image. By applying the experimental idea that a ratio of intensity of the chlorophyll fluorescence at 740 nm to that at 685 nm showed a linear correlation to the chlorophyll concentration, the fluorescence image of the ginko tree obtained by the lidar was converted to the chlorophyll concentration distribution image.     

Five new steroidal glycosides,pregnedioside-A, -B,and their three monoacetates,from an Okinawan soft coral of Alcyonium sp.

Five new pregnene-type steroidal glycosides, named pregnedioside -a ($\text{1}$), 4′-O-acetyl-pregnedioside-a ($\text{2}$), 3′-O-acetyl-pregnedioside-a ($\text{3}$), pregnedioside-b ($\text{5}$), and 4′-O-acetyl-pregnedioside-b ($\text{6}$), were isolated from an Okinawan soft coral of Alcyonium sp. and their structures were elucidated. These are rare examples of steroidal gylcosides from soft coral.     

PREPARATION AND PROPERTIES OF CHLOROPHYLL/WATER-SOLUBLE MACROMOLECULAR COMPLEXES IN WATER. STABILIZATION OF CHLOROPHYLL AGGREGATES IN THE WATER-SOLUBLE MACROMOLECULE

Abstract— As an artificial model compound of the chlorophyll-protein complex in vivo , the chlorophyll/water-soluble macromolecular complexes were prepared by using synthetic linear polymers of polyvinylpyrrolidone (PVP), polyvinyl alcohol (PVA), polyethylene glycol (PEG), and a natural polymer of bovine serum albumin (BSA). By the method described here, it is possible to prepare an aqueous chlorophyll (Chl)-macromolecular complex solution of a desired Chi aggregate, such as: Chi a (670), Chi a (740) and Chi b ; and with a desired relative content and concentration. These procedures for preparing such complexes will have wide applicability for technical use in Chi studies. For example, extremely diluted aqueous complex solutions of at least 1 × 10^-4% wt Chi a (670 or 740)-macromolecular complex / wt can be obtained without changing the spectral features. From viscosity measurements, the structures of the complexes were inferred: (1) for a linear macromolecular (PVA or PVP) complex, a Chi species is tightly surrounded by a chain of the polymer causing shrinkage of the chain; (2) globular BSA molecules surround Chi species to form a large complex. The mechanism of stabilization of Chi aggregates in thylakoid membrane was discussed concerning an analogy to the complexes studied here.     

Surface,thermal and mechanical characteristics of polymeric solids

Surface molecular motions of amorphous polymeric solids have been directly measured on the basis of lateral force microscopic (LFM) and scanning viscoelasticity microscopic (SVM) measurements. SVM measurement revealed that the molecular motion at the surface of the monodisperse polystyrene (PS) film with Mn less than ca.30k was fairly activated compared with that in a bulk region, mainly due to the surface segregation of chain end groups. Temperature dependent LFM and SVM measurement revealed that the surface glass transition temperature, Tg of the monodisperse PS film was lower than the bulk one, even though Mn was fairly large as 140k and also, that the time-temperature superposition was applicable to the surface relaxation process. The chain end group segregation at the air/PS interface was verified from the dynamic secondary ion mass spectroscopic (DSIMS) depth profiling of the proton and deuterium ion for the end-labeled deutrated-PS (dPS) film. These results suggest that the surface Tg is depressed due to an increase in free volume near surface region, being induced by the preferential surface localization of chain end groups.     

13C NMR spectroscopic studies of the behaviors of carbonyl compounds in various solutions

¹³C NMR spectroscopic studies were performed for carbonyl compounds having a hydroxyl group, a carboalkoxy group, an acetoxy group, or a carboxyl group in various solvents with different polarities for observation of their behaviors of ¹³C NMR chemical shifts of carbonyl carbons in solutions. It was found that the chemical shifts of the carbonyl carbons in ¹³C NMR have good correlation with the empirical parameter for solvent polarities, E_T^N, depending on the structures. Inter- or intramolecular hydrogen bonding and dipolar-dipolar interactions appear to play a key role in this observation.