Analysis of Colubroidea snake venoms by liquid chromatography with mass spectrometry: evolutionary and toxinological implications

The evolution of the venomous function of snakes and the diversification of the toxins has been of tremendous research interest and considerable debate. It has become recently evident that the evolution of the toxins in the advanced snakes (Colubroidea) predated the evolution of the advanced, front-fanged delivery mechanisms. Historically, the venoms of snakes lacking front-fanged venom-delivery systems (conventionally grouped into the paraphyletic family Colubridae) have been largely neglected. In this study we used liquid chromatography with mass spectrometry (LC/MS) to analyze a large number of venoms from a wide array of species representing the major advanced snake clades Atractaspididae, Colubrinae, Elapidae, Homalopsinae, Natricinae, Psammophiinae, Pseudoxyrhophiinae, Xenodontinae, and Viperidae. We also present the first sequences of toxins from Azemiops feae as well as additional toxin sequences from the Colubrinae. The large body of data on molecular masses and retention times thus assembled demonstrates a hitherto unsuspected diversity of toxins in all lineages, having implications ranging from clinical management of envenomings to venom evolution to the use of isolated toxins as leads for drug design and development. Although definitive assignment of a toxin to a protein family can only be done through demonstrated structural studies such as N-terminal sequencing, the molecular mass data complemented by LC retention information, presented here, do permit formulation of reasonable hypotheses concerning snake venom evolution and potential clinical effects to a degree not possible till now, and some hypotheses of this kind are proposed here. The data will also be useful in biodiscovery.     

Atomic Xα calculations based on EHFS(α) = Eexp

The total energies and one-electron energies for first- and second-row atoms were calculated by using the Hartree–Fock and the Hartree–Fock-Slater Hamiltonian with X_α orbitals, u_i(α_exp); α was parametrized from E^HFS (α_exp) = E^exp. The E^HF (α_exp) total energies are always higher than the Hartree–Fock energies for the atoms. The relation of the calculated ionization potential to the experimental ionization potential depends on the α used to define u_i(α), α_exp, or α_HF.     

Ring strain and its effect on the rate of the general-base catalyzed enolization of cyclobutanone

[reaction: see text] The 3-quinuclidinone-catalyzed (pK(BH) = 7.5) enolization of cyclobutanone (1) in D(2)O at 25 degrees C, I = 1.0 (KCl) was followed by deuterium incorporation, which was determined by (1)H NMR. The second-order rate constant for the buffer-catalyzed deprotonation of 1 was found to be k(B) = 3.3 x 10(-4) M(-1) s(-1), which is compared to rates for acetone and 2-(2'-oxopropyl)benzaldehyde under similar conditions. The data shows that ring strain has very little effect on the energy barrier to deprotonation of 1 vs the unstrained systems.     

Photodissociation dynamics of pyridine

Photodissociation of pyridine, 2,6-d2-pyridine, and d5-pyridine at 193 and 248 nm was investigated separately using multimass ion imaging techniques. Six dissociation channels were observed at 193 nm, including C5NH5 --> C5NH4 + H (10%) and five ring opening dissociation channels, C5NH5 --> C4H4 + HCN, C5NH5 --> C3H3 + C2NH2, C5NH5 --> C2H4 +C3NH, C5NH5 --> C4NH2 + CH3 (14%), and C5NH5 --> C2H2 + C3NH3. Extensive H and D atom exchanges of 2,6-d2-pyridine prior to dissociation were observed. Photofragment translational energy distributions and dissociation rates indicate that dissociation occurs in the ground electronic state after internal conversion. The dissociation rate of pyridine excited by 248-nm photons was too slow to be measured, and the upper limit of the dissociation rate was estimated to be 2x10(3) s(-1). Comparisons with potential energies obtained from ab initio calculations and dissociation rates obtained from the Rice-Ramsperger-Kassel-Marcus theory have been made.     

Electrophoretic mobility of a particle covered with an ion-penetrable membrane

The electrophoretic behavior of a planar particle covered by an ion-penetrable membrane, which simulates a biological entity, is investigated. We show that, in general, a point charge model will overestimate the electrophoretic mobility of a particle and the deviation increases with the increase in the concentration of fixed charge and with the decrease in the thickness of membrane layer. As in the case of a point charge model, the present model also predicts a local maximum in the absolute mobility as the thickness of membrane layer varies. If the sizes of counterions of various valences are the same, then the lower the valence of counterions, the larger the mobility, and the larger the counterions, the greater the mobility. The latter is consistent with the experimental observations in the literature. For the level of the concentration of fixed charge examined, the effect of coions on the mobility is negligible.     

Determination of selected elements in bone samples by neutron activation and γ-spectrometry

A non-destructive method for the quantification of eleven elements in bone samples is described. The analytical scheme is based on short (30 s) irradiation with thermal neutrons followed immediately (decay time 10 s) by counting fluorine-20 for 30 s and, after a total waiting time of 150 s, by 10-min γ-spectrometry counting, which give data for Ca, Cl, Mg, Mn, Na, and V. Use of a boron carbide shield for a second set of irradiations with epithermal neutrons permits the additional determination of bromine and strontium and calculation of the contribution of aluminium and phosphorus to the total activity of ₂₈Al.     

Large-scale resonance amplification of optical sensing of volatile compounds with chemoresponsive visible-region diffraction gratings

Micropatterning of the vapochromic charge-transfer salt, [Pt(CNC6H4C10H21)4][Pd(CN)4], on transparent platforms yields transmissive chemoresponsive diffraction gratings. Exposure of the gratings to volatile organic compounds (VOCs) such as chloroform and methanol leads to VOC uptake by the porous material comprising the grating lattice or framework, and a change in the material's complex refractive index, ?. The index change is accompanied by a change in the degree of index contrast between the lattice and the surrounding medium (in this case, air), and a change in the diffraction efficiency of the grating. When a monochromatic light source that is not absorbed by the lattice material is employed as a probe beam, only changes in the real component of ? are sensed. Under these conditions, the grating behaves as a nonselective, but moderately sensitive, sensor for those VOCs capable of permeating the porous lattice material. When a probe color is shifted to a wavelength coincident with the vapochromic charge-transfer transition of the lattice material, the sensor response is selectively amplified by up to 3.5 orders of magnitude, resulting in greatly enhanced sensitivity and some degree of chemical specificity. On the basis of studies at four probe wavelengths, the amplification effect is dominated by resonant changes in the imaginary component of the refractive index. The observed wavelength- and analyte-dependent amplification effects are quantitatively well described by a model that combines a Kramers-Kronig analysis with an effective-medium treatment of dielectric effects.     

Heteropoly acids in the determination of phosphorus by neutron activation analysis

Phosphorus is selectively extracted as molybdovanadophosphoric acid (MVPA) and determined indirectly using⁵²V. Silicon, germanium, arsenic, fluoride and tannic acid do not interfere. The sensitivity for phosphorus was 1421±13 counts⁵²V per ng P ml^–1 with a detection limit of 0.2 ng P ml^–1. The precision is ±10% over the range 0.7±70 ng P ml^–1. The sensitivity is four orders of magnitude greater than for conventional neutron activation analysis (NAA) using the³¹P(n, )²⁸ Al reaction and a SLOWPOKE II reactor. Greater selectivity for phosphorus is obtained than by direct measurement of³²P by beta ray spectroscopy.     

Photoisomerization and photodissociation of aniline and 4-methylpyridine

Photoisomerization and photodissociation of aniline and 4-methylpyridine at 193 nm were studied separately using multimass ion imaging techniques. Photofragment translational energy distributions and dissociation rates were measured. Our results demonstrate that more than 23% of the ground electronic state aniline and 10% of 4-methylpyridine produced from the excitation by 193 nm photons after internal conversion isomerize to seven-membered ring isomers, followed by the H atom migration in the seven-membered ring, and then rearomatize to both methylpyridine and aniline prior to dissociation. The significance of this isomerization is that the carbon, nitrogen, and hydrogen atoms belonging to the alkyl or amino groups are involved in the exchange with those atoms in the aromatic ring during the isomerization.     

An electrochemical study of redox indicators : Part I. Substituted chrysoidines

The electrochemical oxidation of various substituted chrysoidines was studied by cyclic voltammetry, to determine which have stable oxidation products. Only 4-hydroxy-chrysoidine has a stable product; the apparent oxidation potential is 0.779 V vs. NHE. 4-Methoxy- and 4-ethoxy-chrysoidine rapidly lose methanol or ethanol, respectively, so that the 4-hydroxychrysoidine wave appears on subsequent scans. All the other chrysoidines studied are irreversible. The results indicate that a hydroxy group in the 4-position is necessary for stability; the 4-alkoxychrysoidines can achieve the stable quinoidal structure by cleavage of the alkoxy group after nucleophilic attack.