A high precision spectrophotometric method for on-line shipboard seawater pH measurements: the automated marine pH sensor (AMpS)

Measurement strategies for understanding the oceanic CO(2) (carbon dioxide) system are moving towards in situ and ship of opportunity sampling techniques. Automated instrumentation with high accuracy and sampling frequencies will enable a greater understanding of the fluxes of marine carbon and lead to a more reliable constrain on the calculated uptake of anthropogenic CO(2) by the oceans. This paper describes the automated marine pH sensor (AMpS); new instrumentation and methodology for the determination of seawater pH using dual spectrophotometric measurements of sulfonephthalein indicator in a semi-continuous seawater stream. The pH values measured during a recent study in the Weddell Sea are used to illustrate the excellent properties of the AMpS. The method has an on-line precision of better than 0.001 pH units and an estimated accuracy of better than 0.004 pH units. The instrument is compact, portable and has a measurement frequency of 20 samples per hour. The instrument is ideally suitable for operation on ships of opportunity.     

Adsorption and diffusion on a stepped surface: atomic hydrogen on Pt(211)

We present density functional theory calculations for atomic hydrogen interacting with a stepped surface, the Pt(211) surface. The calculations have been performed at the generalized gradient approximation level, using a slab representation of the surface. This is the state-of-the-art method for calculating the interaction of atoms or molecules with metal surfaces, nevertheless only few studies have used it to study atoms or molecules interacting with stepped surfaces, and none, to the best of our knowledge, have considered hydrogen interacting with stepped platinum surfaces. Our goal has been to initiate a systematic study of this topic. We have calculated the full three-dimensional potential energy surface (PES) for the H/Pt(211) system together with the vibrational band structure and vibrational eigenfunctions of H. A deep global minimum of the PES is found for bridge-bonded hydrogen on the step edge, in agreement with experimental results for the similar H/Pt(533) system. All the local vibrational excitations at the global minimum have been identified, and this will serve as a helpful guide to the interpretation of future experiments on this (or similar) system(s). Furthermore, from the calculated PES and vibrational band structure, we identify a number of consequences for the interpretation or modelling of diffusion experiments studying the coverage and directional dependence of atomic hydrogen diffusion on stepped platinum surfaces.     

Oscillatory dynamics protect enzymes and possibly cells against toxic substances

We have used the oscillating peroxidase-oxidase (PO) reaction as a model system to study how oscillatory dynamics may affect the influence of toxic reaction intermediates on enzyme stability. In the peroxidase-oxidase reaction reactive intermediates, such as hydrogen peroxide, superoxide, and hydroxyl radical are formed. Such intermediates inactivate many cellular macromolecules such as proteins and nucleic acids. These reaction intermediates also react with peroxidase itself to form an inactive enzyme. The fact that the PO reaction shows bistability between an oscillatory and a steady state gives us a unique possibility to compare such inactivation when the system is in one of these two states. We show that inactivation of peroxidase is slower when the system is in an oscillatory state, and using numerical simulations we provide evidence that oscillatory dynamics lower the average concentration of the reactive intermediates.     

Greenhouse gas abatement — toward Pareto-optimal decisions under uncertainty

This paper examines the economic logic of integrated assessment — balancing the costs against the benefits of greenhouse gas abatement. Stylized facts are employed in a multiregion computable general equilibrium model with a public good. The percentage shares of global emissions are determined outside the model — based upon some form of international agreement — and emission rights are tradeable between regions. The analysis is confined to Pareto-optimal (cooperative) solutions. We focus on the sensitivity of initial decisions to low-probability, high-consequence scenarios associated with cumulative emissions. For simplicity, there are only two regions, two tradeable goods, two time periods, and two states-of-world. With the particular form of public good model adopted here (production rather than utility function impacts), it turns out that a Pareto-optimal hedging strategy is indepedent of the emission shares allocated to each region. Equity issues may be separated from those of economic efficiency. Similar results extend to cases in which there are additional regions, tradeable goods, time periods, and states-of-world.Presented at the Conference on the Economics of Global Environmental Change, Birmingham University, May 9–11, 1994. This research was funded by the Electric Power Research Institute (EPRI). The views presented here are solely those of the individual authors, and do not necessarily represent the views of EPRI or its members.     

Ab initio excited-state dynamics of the photoactive yellow protein chromophore

The photoisomerization mechanism of the neutral form of the photoactive yellow protein (PYP) chromophore is investigated using ab initio quantum chemistry and first-principles nonadiabatic molecular dynamics (ab initio multiple spawning or AIMS). We identify the nature of the two lowest-lying excited states, characterize the short-time behavior of molecules excited directly to S2, and explain the origin of the experimentally observed wavelength-dependent photoisomerization quantum yield.     

Conformational analysis and electronic structure of acetanilide

The calculations of the electronic structure and conformational analysis of the acetanilide were carried out using the CNDO/2 method. The results show that the endo form is 1.2 Kcal/mole more stable than the exo form. The most stable conformation of the exo isomer corresponds to the dihedral angle of 90 ° between the phenyl and acetamide plane, whereas the minimum energy conformation of the endo isomer corresponds to the dihedral angle 50 °–60 °. A comparison of the calculated and experimental dipole moments suggests also the dihedral angle of 50 °–60 °. A comparison with experiment indicates that this molecular orbital method is good for conformational analysis and gives electronic structure which is compatible with spectroscopic measurement. The calculated conformational analysis and electronic structure of the acetanilide are in excellent agreement with experiments.We thank Professor J. P. Green for helpful discussions. This research was supported by a grant from the National Institute of Mental Health (MH-17489-01).     

Hydrophilic interaction chromatography using amino and silica columns for the determination of polar pharmaceuticals and impurities

Hydrophilic interaction chromatography (HILIC) is described as a useful alternative to reversed-phase chromatography for applications involving polar compounds. In the HILIC mode, an aqueous-organic mobile phase is used with a polar stationary phase to provide normal-phase retention behavior. Silica and amino columns with aqueous-acetonitrile mobile phases offer potential for use in the HILIC mode. An examination of the retention and separation of several pyrimidines, purines, and amides on silica and amino columns from three manufacturers revealed that mobile phases should contain a buffer or acid for pH control to achieve similar and reproducible results among columns from different sources. Amino columns may also be used in an anion-exchange mode, which provides an advantage for some applications. In some cases, silica can provide different selectivity and better separation than an amino column. Example applications include: low-molecular-mass organic acids and amides as impurities in non-polar drug substances, 5-fluorouracil in 5-fluorocytosine, guanine in acyclovir, and different selectivity for polar basic compounds compared to an ion-pairing system.