Magnetic field effects on cytochrome c-mediated bioelectrocatalytic transformations

Constant magnetic fields affect many biological transformations, but we lack mechanistic understanding of the processes. The magnetohydrodynamic effect may account for the enhancement of bioelectrocatalytic transformations at interfaces. This is exemplified by the bioelectrocatalyzed cytochrome c-mediated reduction of oxygen and oxidation of lactate in the presence of cytochrome oxidase and lactate dehydrogenase, respectively. We observe significant magnetic field effects on the rates of bioelectrochemical transformations (ca. 3-fold increase) at the functionalized interfaces at field strengths, B, up to 1 T. We show that the limiting current is proportional to the B(1/3)C*(4/3), where C is the concentration of electroactive species. The results may have important implications on the understanding of the magnetic field effects on natural biocatalytic processes at membranes and on the enhancement of biotransformations in biotechnology.     

Reversible addition of ethylene to a pincer-based boryl-iridium unit with the formation of a bridging ethylidene

This report examines reactions of a series of Ir complexes supported by the diarylboryl/bis(phosphine) PBP pincer ligand with ethylene: (PBP)IrH₄ (1), (PBP)IrH₂(CO) (2), and (PBP)Ir(CO)₂ (3). The outcomes of these reactions differ from those typical for Ir complexes supported by other pincer ligands and do not give rise to simple ethylene adducts or products of insertion of Ir into the C–H bond of ethylene. Instead, the elements of ethylene are incorporated into the molecules to result in B–C bonds. In the case of 2 and 3, ethylene addition results in the formation of B/Ir bridging ethylidene complexes 5 and 6. For 6, the addition of ethylene (and the analogous addition of 1-hexene) is shown to be partially reversible. Addition of ethylene to 2 and 3 is remarkable because they are saturated at Ir and yet the net outcome is such that ethylene binds without replacing any ligands already present. A mechanistic inquiry suggests that dissociation of CO from 3 or 6 is necessary in order for the addition or loss of ethylene to proceed.

(PBP)Ir pincer complexes containing a boryl-iridium linkage reversibly bind ethylene as an ethylidene bridging B and Ir.     

Abnormally mild synthesis of bis(dithiolo)pyrroles from 2,5-dimethylpyrroles

[chemical reaction: see text]. Treatment of N-substituted 2,5-dimethylpyrroles 2 with an equilibrated mixture of disulfur dichloride and DABCO in chloroform at 0 degrees C gives pentathiepinopyrroles 3 in moderate yields; further reaction of 3 with the same mixture at room temperature leads, in an extensive reaction cascade, to bis(dithiolo)pyrroles 4 in high yield; 2 can be converted into 4 in a one-pot operation under unusually mild conditions.     

Superoxometal-catalyzed co-oxidation of alcohols and nitrous acid with molecular oxygen

A superoxochromium(III) ion, Cr_aqOO²⁺, acts as a catalyst for the co-oxidation of alcohols and nitrous acid with molecular oxygen according to the stoichiometry: CH₃OH+HNO₂+O₂→CH₂O + NO₃⁻ + H₂O+H⁺. The kinetics are second order in [HNO₂] and independent of the concentrations of the superoxochromium catalyst, substrate, and O₂. The proposed mechanism features the disproportionation of HNO₂ to NO and NO₂, both of which react rapidly with Cr_aqOO²⁺. The Cr_aqOO²⁺/NO reaction generates another equivalent of NO₂ and a mole of Cr_aqO²⁺, the active oxidant. The two-electron oxidation of the alcohol by Cr_aqO²⁺ produces Cr_aq²⁺, which reacts rapidly with O₂ to regenerate the catalyst, Cr_aqOO²⁺. The NO₂/Cr_aqOO²⁺ reaction yields the peroxynitrato complex, Cr_aqOONO₂²⁺, in a dead-end equilibrium process that has no effect on the catalytic reaction. The disproportionation of NO₂ yields the final nitrogen-containing product, NO₃⁻, and regenerates an equivalent of HNO₂. Under a fixed set of conditions, the relative catalytic efficiency (CE) of Cr_aqOO²⁺ decreases as its concentration increases owing to the competition between O₂ and Cr_aqOO²⁺ for the intermediate Cr_aq²⁺.     

Covalent chemistry and conformational dynamics of topologically chiral amide-based molecular knots

The readily available in gram quantities tris(allyloxy)knot of the amide-type 5 (knotane) can be completely and partially deprotected with nBu(3)SnH in the presence of a palladium catalyst resulting in hydroxyknotanes 7-9. These, in turn, react with diethylchlorophosphate giving rise to knotanes equipped with between one and three phosphoryl groups. Sulfonylation of bis(allyloxy)monohydroxyknotane 8 with p-toluenesulfonyl chloride and, following removal of one or two allyl groups from the intermediate monosulfonate 13, give rise to sulfonyloxy-allyloxy-hydroxy- and sulfonyloxy-dihydroxy-knotanes 15 and 14, respectively. This provides a convenient method for the preparation of knotanes with any substitution pattern. All new knotanes have been isolated in preparative amounts and as highly pure substances with an exception of allyloxy-dihydroxyknotane 9. This compound could only be obtained as a mixture with the corresponding monohydroxy-derivative 8. The structures of all synthesized compounds were established by means of FAB and MALDI TOF mass spectrometry, (1)H and (31)P NMR spectroscopy. The triphosphorylated knotane 10 exhibits high solubility in alcohols, allowing its complete enantiomeric resolution with a commercially available chiral HPLC column. (1)H,(1)H DQF-COSY correlation spectroscopy along with H/D exchange experiments and ab initio calculations provided the first detailed (1)H NMR signal assignments of knotanes in [D(6)]DMSO solution. The combination of variable temperature (1)H and (31)P NMR spectroscopy and molecular modeling has been applied to study the conformational behavior of the new knotanes in different solvents. It has been shown that in DMSO solution at room temperature knotanes exist in a relatively rigid nonsymmetrical conformation similar to that found in the solid state while faster conformational exchange leading to the average D(3) symmetrical structure was detected in a number of other solvents.     

Vibrational overtone spectroscopy of jet-cooled methanol from 5000 to 14 000 cm(-1)

Spectra of jet-cooled methanol in the overtone and combination region from 5000 to 14 000 cm(-1) have been obtained by means of infrared laser-assisted photofragment spectroscopy. Many of the observed features are assigned to combination bands of the type nnu(1)+nu(6), nnu(1)+nu(8), and nnu(1)+nu(6)+nu(8) (n=1,2,3), where nu(1) is the OH stretch, nu(6) is the OH bend, and nu(8) is the CO stretch. These bands show sharp torsion-rotation structure with features as narrow as 0.1 cm(-1). We also observe CH stretch overtones that are weaker than the OH containing combination bands and lack distinct torsion-rotation structure above v(CH)=2. The extent of observed structure on these bands allows us to place limits on the intramolecular vibrational energy redistribution decay rates in the upper vibrational states. We report a global fit of the observed band centers to a simple expression involving low-order anharmonicity constants.     

Amyloidosis of Alzheimer's Abeta peptides: solid-state nuclear magnetic resonance, electron paramagnetic resonance, transmission electron microscopy, scanning transmission electron microscopy and atomic force microscopy studies

Aggregation cascade for Alzheimer's amyloid-beta peptides, its relevance to neurotoxicity in the course of Alzheimer's disease and experimental methods useful for these studies are discussed. Details of the solid-phase peptide synthesis and sample preparation procedures for Alzheimer's beta-amyloid fibrils are given. Recent progress in obtaining structural constraints on Abeta-fibrils from solid-state NMR and scanning transmission electron microscopy (STEM) data is discussed. Polymorphism of amyloid fibrils and oligomers of the 'Arctic' mutant of Abeta(1-40) was studied by (1)H,(13)C solid-state NMR, transmission electron microscopy (TEM) and atomic force microscopy (AFM), and a real-time aggregation of different polymorphs of the peptide was observed with the aid of in situ AFM. Recent results on binding of Cu(II) ions and Al-citrate and Al-ATP complexes to amyloid fibrils, as studied by electron paramagnetic resonance (EPR) and solid-state (27)Al NMR techniques, are also presented.     

Quantized Hamilton Dynamics

The paper describes the quantized Hamilton dynamics (QHD) approach that extends classical Hamiltonian dynamics and captures quantum effects, such as zero point energy, tunneling, decoherence, branching, and state-specific dynamics. The approximations are made by closures of the hierarchy of Heisenberg equations for quantum observables with the higher order observables decomposed into products of the lower order ones. The technique is applied to the vibrational energy exchange in a water molecule, the tunneling escape from a metastable state, the double-slit interference, the population transfer, dephasing and vibrational coherence transfer in a two-level system coupled to a phonon, and the scattering of a light particle off a surface phonon, where QHD is coupled to quantum mechanics in the Schrödinger representation. Generation of thermal ensembles in the extended space of QHD variables is discussed. QHD reduces to classical mechanics at the first order, closely resembles classical mechanics at the higher orders, and requires little computational effort, providing an efficient tool for treatment of the quantum effects in large systems.     

Adsorption of CF4 on the internal and external surfaces of opened single-walled carbon nanotubes: a vibrational spectroscopy study

Infrared spectroscopy has been used to make the first experimental discrimination between molecules bound by physisorption on the exterior surface of carbon single-walled nanotubes (SWNTs) and molecules bound in the interior. In addition, the selective displacement of the internally bound molecules has been observed as a second adsorbate is added. SWNTs were opened by oxidative treatment with O(3) at room temperature, followed by heating in a vacuum to 873 K. It was found that, at 133 K and 0.033 Torr, CF(4) adsorbs on closed SWNTs, exhibiting its nu(3) asymmetric stretching mode at 1267 cm(-1) (red shift relative to the gas phase, 15 cm(-1)). Adsorption on the nanotube exterior is accompanied by adsorption in the interior in the case of opened SWNTs. Internally bound CF(4) exhibits its nu(3) mode at 1247 cm(-1) (red shift relative to the gas phase, 35 cm(-1)). It was shown that, at 133 K, Xe preferentially displaces internally bound CF(4) species, and this counterintuitive observation was confirmed by molecular simulations. The confinement of CF(4) inside (10,10) single-walled carbon nanotubes does not result in the production of lattice modes that are observed in large 3D ensembles of CF(4).     

Degrees of unsolvability of first order decision problems for finitely presented groups

We show that for any arithmetical -degree there is a first order decision problem such that has -degree for the free 2-step nilpotent group of rank 2. This implies a conjecture of Sacerdote.