EXAFS measurements for liquid As2Se3 at high temperatures and pressures

Extended X-ray absorption fine structure (EXAFS) spectra from liquid As₂Se₃ around both the As and Se K-edges in the temperature-pressure range up to 1400°C and about 60 bar were measured. For the EXAFS measurements, a new type of high pressure vessel and a sample cell of own design made of polycrystalline sapphire were developed. Distinct EXAFS oscillations were obtained even at 1400°C. When the semiconductor-to-metal transition occurs at about 1000°C, the local environment around a central As atoms is substantially changes and a new As neighbor site is induced.     

Determination of boron in water samples at nanograms per cubic decimeter levels by reversed-phase partition high-performance liquid chromatography with precolumn complexation reaction using salicylaldehyde and 1-amino-8-naphthol-3,6-disulfonate

A new method for the highly sensitive and selective determination of boron at nanograms per cubic decimeter levels has been developed based on the derivatization reaction of boron using salicylaldehyde and 1-amino-8-naphtol-3,6-disulfonate with reversed-phase partition high-performance liquid chromatography. A detection limit as low as 2.0 nmol/dm³ (22 ng/dm³) was achieved without any preconcentration. No significant interference was observed in the determination of 16 μmol/dm³ of boron with the addition of nine metal ions (Al^III, Cu^II, Co^II, Fe^II, Fe^III, Ni^II, Mn^II, V^V, Zn^II) at concentrations 100 times greater than that of boron without any masking procedure. The proposed method was successfully applied to the determination of boron in river water, tap water, doubly distilled water, and highly purified water. Figure Scheme of formation of boron-azomethine-H complex with salicylaldehyde and 1-amino-8-naphthol-3, 6-disulfonate     

Photoluminescent properties and molecular structures of [NaphAu(PPh(3))] and [mu-Naph {Au(PPh(3))}(2)] ClO(4) (Naph = 2-naphthyl)

The complexes [NaphAu(PPh(3))], and [mu-Naph{Au(PPh(3))}(2)]ClO(4), having the Au-C (aromatic) bond have been synthesized and characterized. The unique structure of with two gold atoms bridged by a naphthyl group has been determined by X-ray crystallography. The intramolecular Au-Au separation in is 2.7731(4) A. Upon excitation at 266 nm, both complexes display intraligand phosphorescence at room temperature in solution and in solid state.     

Ab initio protein structure prediction with force field parameters derived from water-phase quantum chemical calculation

Molecular dynamics (MD) simulations are extensively used in the study of the structures and functions of proteins. Ab initio protein structure prediction is one of the most important subjects in computational biology, and many trials have been performed using MD simulation so far. Since the results of MD simulations largely depend on the force field, reliable force field parameters are indispensable for the success of MD simulation. In this work, we have modified atom charges in a standard force field on the basis of water-phase quantum chemical calculations. The modified force field turned out appropriate for ab initio protein structure prediction by the MD simulation with the generalized Born method. Detailed analysis was performed in terms of the conformational stability of amino acid residues, the stability of secondary structure of proteins, and the accuracy for prediction of protein tertiary structure, comparing the modified force field with a standard one. The energy balance between alpha-helix and beta-sheet structures was significantly improved by the modification of charge parameters.     

Force field parameters for rotation around chi torsion axis in nucleic acids

To raise the accuracy of the force field for nucleic acids, several parameters were elaborated, focusing on the rotation around chi torsion axis. The reliability of molecular dynamics (MD) simulation was significantly increased by improving the torsion parameters at C8--N9--C1'--X (X = H1', C2', O4') in A, G and those at C6--N1--C1'--X in C, T, and U. In this work, we constructed small models representing the chemical structure of A, G, C, T, and U, and estimated energy profile for chi-axis rotation by executing numerous quantum mechanical (QM) calculations. The parameters were derived by discrete Fourier transformation of the calculated QM data. A comparison in energy profile between molecular mechanical (MM) calculation and QM one shows that our presently derived parameters well reproduce the energy surface of QM calculation for all the above torsion terms. Furthermore, our parameters show a good performance in MD simulations of some nucleic acids. Hence, the present refinement of parameters will enable us to perform more accurate simulations for various types of nucleic acids.     

Unique Thermal Structural Phase Transitions Exhibited by Unsymmetrical Organometallic Gold(III)-Dithiolene Complexes with Pentylthio and Hexylthio Groups

Unsymmetrical gold(III)-dithiolene complexes are potential candidates for molecular materials that exhibit thermal structural phase transitions. In this study, unsymmetrical ppy-gold(III) (ppy⁻=C-deprotonated-2-phenylpyridine(−)) complexes [AuC5] and [AuC6] coordinated by dithiolene ligands containing tetrathiafulvalene (TTF) skeletons with pentylthio (2-{bis(pentylthio)-1,3-dithiol-2-ylidene}-1,3-dithiol-4,5-dithiolate(2−)) and hexylthio groups (2-{bis(hexylthio)-1,3-dithiol-2-ylidene}-1,3-dithiol-4,5-dithiolate(2−)) were synthesized. Both complexes exhibited a large absorption band at approximately 508 nm, owing to intramolecular ligand-to-ligand charge transfer. One-dimensional columnar structures with head-to-tail molecular arrangements around the metal ions were constructed in the crystals. The flexible alkylthio groups were intercalated into crystalline spaces between dithiolene ligands in the columns. [AuC5] exhibits a simple phase transition at 198 °C between crystalline and isotropic phases irreversibly. The crystalline phase of [AuC6] observed at 25 °C melted at 148 °C. Another crystalline phase grew above 148 °C with a very slow crystallization rate from the liquid phase and was completely transformed into an isotropic phase at 200 °C.     

Space-time analytic smoothing effect for the pseudo-conformally invariant Schrödinger equations

We study the global Cauchy problem for the mass critical nonlinear Schrödinger equations. We prove the global existence of analytic solutions in both space and time variables for sufficiently small and exponentially decaying Cauchy data. The method of proof depends on the Leibniz rule for the generator of pseudo-conformal transforms at the L ² critical level.     

Photoresponsive change of oxygen-binding affinity of a cobalt schiff-base complex with an axially coordinating stilbazole residue of a copolymer

The reversible binding reaction of oxygen to N,N'-ethylene bis(salicylideneiminato) cobalt(II) (CoS), to which a photoisomerizable stilbazole residue of copolymer 1 coordinated, was investigated. The E form of the stilbazole residues coordinating to CoS, (E)-1-CoS, showed photoisomerization into the Z form, (Z)-1-CoS, on direct ultraviolet irradiation and negligible reverse isomerization. The oxygen-binding equilibrium constant (K) values for (E)-1-CoS and (Z)-1-CoS in toluene were 3.3 x 10(-2) mmHg-1 and 4.8 x 10(-3) mmHg(-1), respectively, at 10 degrees C. Although the pK(a) values of the E and Z forms of the stilbazole residue were similar, the oxygen-binding affinity of (Z)-1-CoS was small in terms of the linear correlation of the logarithm of K (ln K) versus the pK(a). Steric hindrance of the polymer chain of 1 on the coordination of the stilbazole residue of (Z)-1 to CoS was thought to cause the small K. A photoresponsive change of apparent oxygen-binding affinity of 1-CoS along with the E/Z isomerization of the stilbazole residues was observed. The ratio of (Z)-1-CoS converted from (E)-1-CoS by the ultraviolet irradiation could be estimated from analysis of absorption spectra for the oxygen binding of a resulting mixture of (E)-1-CoS and (Z)-1-CoS.     

Implementation of pi-pi interactions in molecular dynamics simulation

No explicit pi-pi interaction term has been incorporated in the conventional molecular dynamics (MD) simulation programs in spite of its significant role in the folding of biomolecules and the clustering of organic chemicals. In this article, we propose a technique to emphasize the effect of pi-pi interactions using a function of energy and implement it into an MD simulation program. Several trial calculations show that the pi-pi incorporated program gives improved results consistent with experimental data on atom geometry and has no unfavorable interference with the conventional computational framework. This indicates an importance of the explicit consideration of pi-pi interactions in MD simulation.