Experimental and Theoretical Spectral(FT-IR,Raman,NMR,UV-Vis and NLO)Analysis of a Potential Anti-Tumor Drug:1-Methyl-6-Nitro-1H-Benzimidazole

In the present work, the experimental and the theoretical spectroscopic properties of 1-Methyl-6-Nitro-1H- Benzimidazole were investigated. The FT-IR (400~4 000 cm-1) and FT-Raman spectra (100~4 000 cm-1) of 1-Methyl-6-Nitro-1H- Benzimidazole in the solid phase were recorded. Also, experimental NMR and UV spectra of titled molecule were measured. To interpret the experimental data, geometric parameters, vibrational frequencies, NMR, UV spectra and NLO analysis of the optimized molecule were calculated using ab initio Hartree–Fock (HF) method and density functional theory (B3LYP) method with the 6-31++G(d,p) and 6-311++G(d,p) basis sets. Vibrational bands were assigned based on the potential energy distribution using the VEDA 4 program. The theoretical results showed good agreement with the experimental values.     

Producing of qualified oil and carbon black from waste tyres and pet bottles in a newly designed pyrolysis reactor

Journal of Thermal Analysis and Calorimetry - Waste tyre and waste polyethylene terephthalate (PET) bottles are major environmental problems. In this study, by using newly designed simple and...     

Unexpected Cyclization of Dipyridyl-glycoluril in the Presence of Formaldehyde and Strong Acid: A New Scaffold with a Potential as an Anion Receptor

In an attempted synthesis of peripherally pyridine-substituted cucurbituril, an unexpected cyclized product was obtained. A careful NMR analysis followed by mass spectrometry and preliminary crystallographic analyses, helped us in resolving the structure. The structure has two quaternized pyridine functionalities and a groove suitable as a potential receptor site. In addition, just like the parent glycoluril structure, two remaining urea-derived nitrogens can be alkylated by alkyl halides. Thus, we believe this high yielding reaction may become an entry point to a new class of anion receptors.     

Synthesis and antitumor activity of new silver(I)-N-heterocyclic carbene complexes

Abstract

In this study, two novel benzimidazole-based N-heterocyclic carbene ligands (1a-b) and their silver(I) complexes (2a-b) were synthesized. All new compounds were characterized by FT-IR, LC-MS, ¹H NMR, and ¹³C NMR spectroscopies. The in vitro antitumor activities of NHC ligands (1a-b) and their silver(I) complexes (2a-b) against DU-145 human prostate cancer cells, MDA-MB-231 and MCF-7 human breast cancer cells and L-929 (normal cells adipose from mouse) were also determined using MTT analysis for 24?h, 48?h, and 72?h. The results showed that while NHC ligands did not have in vitro antitumor activity on MCF-7, MDA-MB-231 and DU-145 cells, Ag(I)-NHC complexes have in vitro antitumor activities. The in vitro antitumor activity of 2a was found to be lower than that of 2b. Ag(I)-NHC complexes were observed to have higher IC₅₀ values for non-cancerous cell lines than cancer cells.     

Chromone-based Schiff base metal complexes as catalysts for catechol oxidation: Synthesis,kinetics and electrochemical studies

Two new Schiff base ligands with chromone moiety and their transition metal complexes were synthesized and characterized by elemental analyses, magnetic susceptibility, molar conductance and TGA analyses, FT IR, UV-Vis, NMR and mass spectroscopy. All the complexes synthesized have been investigated as functional models for catechol oxidase (catecholase) activity by employing 3,5-di-tert-butylcatechol as a model substrate. The two mononuclear copper(II) and two mononuclear iron(II) complexes show catecholase activity with turnover (k_cat) numbers lying in the range 27.2–1328.4 h^?1. According to the kinetic measurement results, the rate of catechol oxidation follows first order kinetics and iron(II) complexes were found to have higher catalytic activity than those of copper(II) complexes. Electron-donating substituent on Schiff base ligand enhanced the catalytic activity of metal complexes while the electron-withdrawing substituent led to a decrease in activity. The electrochemical properties of two Schiff bases and their metal complexes were also investigated by Cyclic Voltammetry (CV) using glassy carbon electrode (GCE) at various scan rates. Electrochemical processes of all the compounds were observed as irreversible.     

Electricity production by a microbial fuel cell fueled by brewery wastewater and the factors in its membrane deterioration

Electricity production from brewery wastewater using dual-chamber microbial fuel cells (MFCs) with a tin-coated copper mesh in the anode was investigated by changing the hydraulic retention time (HRT). The MFCs were fed with wastewater samples from the inlet (inflow, MFC-1) and outlet (outflow, MFC-2) of an anaerobic digester of a brewery wastewater treatment plant. Both chemical oxygen demand removal and current density were improved by decreasing HRT. The best MFC performance was with an HRT of 0.5 d. The maximum power densities of 8.001 and 1.843 μW/cm2 were obtained from reactors MFC-1 and MFC-2, respectively. Microbial diversity at different condi-tions was studied using PCR-DGGE profiling of 16S rRNA fragments of the microorganisms from the biofilm on the anode electrode. The MFC reactor had mainlyGeobacter,Shewanella, andClostridium species, and some bacteria were easily washed out at lower HRTs. The fouling characteristics of the MFC Nafion membrane and the resulting degradation of MFC performance were examined. The ion exchange capacity, conductivity, and diffusivity of the membrane decreased significantly after foul-ing. The morphology of the Nafion membrane and MFC degradation were studied using scanning electron microscopy and attenuated total reflection-Fourier transform infrared spectroscopy.     

Optimization of Enzyme Co-Immobilization with Sodium Alginate and Glutaraldehyde-Activated Chitosan Beads

In this study, two different materials—alginate and glutaraldehyde-activated chitosan beads—were used for the co-immobilization of α-amylase, protease, and pectinase. Firstly, optimization of multienzyme immobilization with Na alginate beads was carried out. Optimum Na alginate and CaCl₂ concentration were found to be 2.5% and 0.1 M, respectively, and optimal enzyme loading ratio was determined as 2:1:0.02 for pectinase, protease, and α-amylase, respectively. Next, the immobilization of multiple enzymes on glutaraldehyde-activated chitosan beads was optimized (3% chitosan concentration, 0.25% glutaraldehyde with 3 h of activation and 3 h of coupling time). While co-immobilization was successfully performed with both materials, the specific activities of enzymes were found to be higher for the enzymes co-immobilized with glutaraldehyde-activated chitosan beads. In this process, glutaraldehyde was acting as a spacer arm. SEM and FTIR were used for the characterization of activated chitosan beads. Moreover, pectinase and α-amylase enzymes immobilized with chitosan beads were also found to have higher activity than their free forms. Three different enzymes were co-immobilized with these two materials for the first time in this study.     

Conventional and microwave irradiated synthesis,biological activity evaluation and molecular docking studies of highly substituted piperazine-azole hybrids

Azole derivatives(3,6) obtained starting from 1-(2-methoxyphenyl) piperazine were converted to the corresponding Mannich bases containing β-lactame or flouroquinolone core via a one pot three component reaction.The synthesis of conazole analogues was carried out starting from triazoles by three steps.Reactions were carried out under conventional and microwave mediated conditions.All the newly synthesized compounds were screened for their antimicrobial,enzyme inhibition and antioxidant activity,and most of them displayed good-moderate activity.Binding affinities and non-covalent interactions between enzyme-ligand complexes were predicted with molecular docking method at molecular level.Docking results complemented well the experimental results on α-glucosidase and urease inhibitory effects of the compounds.Higher binding affinities and much more interaction networks were observed for active compounds in contrary to inactive ones.It was predicted with the docking studies that triazole and anisole moieties in the structure of the synthesized compounds contributed to the stabilization of corresponding enzymes through noncovalent interactions.     

Common Structural Elements in the Chromophore Binding Pocket of the Pfr State of Bathy Phytochromes

Phytochromes are bimodal photoreceptors which, upon light absorption by the tetrapyrrole chromophore, can be converted between a red‐absorbing state (Pr) and far‐red‐absorbing state (Pfr). In bacterial phytochromes, either Pr or Pfr are the thermally stable states, thereby constituting the classes of prototypical and bathy phytochromes, respectively. In this work, we have employed vibrational spectroscopies to elucidate the origin of the thermal stability of the Pfr states in bathy phytochromes. Here, we present the first detailed spectroscopic analysis of RpBphP6 (Rhodopseudomas palustris), which together with results obtained for Agp2 (Agrobacterium tumefaciens) and PaBphP (Pseudomonas aeruginosa) allows identifying common structural properties of the Pfr state of bathy phytochromes, which are (1) a homogenous chromophore structure, (2) the protonated ring C propionic side chain of the chromophore and (3) a retarded H/D exchange at the ring D nitrogen. These properties are related to the unique strength of the hydrogen bonding interactions between the ring D N‐H group with the side chain of the conserved Asp194 (PaBphP numbering). As revealed by a comparative analysis of homology models and available crystal structures of Pfr states, these interactions are strengthened by an Arg residue (Arg453) only in bathy but not in prototypical phytochromes.     

Electrochemical and spectroscopic characterization of interaction between antimalarial drug cinchonine and human serum albumin at physiological pH

In the present study, the interaction between cinchonine (CCN) and human serum albumin (HSA) was investigated using differential pulse polarography (DPP), cyclic voltammetry (CV) and spectroscopic techniques in Britton-Robinson (B-R) buffer pH 7.4. CCN displayed a main cathodic peak at ?1.228 V (vs. Ag|AgCl|KCl_sat) on mercury working electrode. The addition of HSA into CCN sulfate solution resulted in the decrease of the main reduction peak current of CCN and no new peaks appeared. The decay in the peak current of CCN, after the addition of HSA, showed a decrease in free drug concentration and formation of a biocomplex. The peak current changes of CCN in the presence of HSA were followed by DPP to determine the binding parameters. The logarithm of binding constant and binding ratio between CCN and HSA were 6.128 and 1: 1, respectively. This interaction was also confirmed by UV-Vis and FTIR-ATR spectroscopic measurements.