Mass spectrometry-based chemical mapping and profiling toward molecular understanding of diseases in precision medicine

Precision medicine has been strongly promoted in recent years. It is used in clinical management for classifying diseases at the molecular level and for selecting the most appropriate drugs or treatments to maximize efficacy and minimize adverse effects. In precision medicine, an in-depth molecular understanding of diseases is of great importance. Therefore, in the last few years, much attention has been given to translating data generated at the molecular level into clinically relevant information. However, current developments in this field lack orderly implementation. For example, high-quality chemical research is not well integrated into clinical practice, especially in the early phase, leading to a lack of understanding in the clinic of the chemistry underlying diseases. In recent years, mass spectrometry (MS) has enabled significant innovations and advances in chemical research. As reported, this technique has shown promise in chemical mapping and profiling for answering “what”, “where”, “how many” and “whose” chemicals underlie the clinical phenotypes, which are assessed by biochemical profiling, MS imaging, molecular targeting and probing, biomarker grading disease classification, etc. These features can potentially enhance the precision of disease diagnosis, monitoring and treatment and thus further transform medicine. For instance, comprehensive MS-based biochemical profiling of ovarian tumors was performed, and the results revealed a number of molecular insights into the pathways and processes that drive ovarian cancer biology and the ways that these pathways are altered in correspondence with clinical phenotypes. Another study demonstrated that quantitative biomarker mapping can be predictive of responses to immunotherapy and of survival in the supposedly homogeneous group of breast cancer patients, allowing for stratification of patients. In this context, our article attempts to provide an overview of MS-based chemical mapping and profiling, and a perspective on their clinical utility to improve the molecular understanding of diseases for advancing precision medicine.

An overview of MS-based chemical mapping and profiling, indicating its contributions to the molecular understanding of diseases in precision medicine by answering "what", "where", "how many" and "whose” chemicals underlying clinical phenotypes.     

A density functional theory study on boundary of “superreduced” transition metal carbonyl anions [M(CO)n](M=Cr, n=5, 4, 3, z=2, 4, 6; M=Mn, n=5, 4, 3, z=1, 3, 5; M=Fe, n=4, 3, 2, z=2, 4, 6; M=Co, n=4, 3, 2, z=1, 3, 5)

A nonlocal density functional theory (DFT) method has been applied to the calculations on optimized geometry, Mulliken atomic net charges and interatomic Mulliken bond orders as well as total bonding energies (E) in the binary transition metal carbonyl anions with different reduced states [M(CO)_n]^z− (M=Cr, n=5, 4, 3, z=2, 4, 6; M=Mn, n=5, 4, 3, z=1, 3, 5; M=Fe, n=4, 3, 2, z=2, 4, 6; M=Co, n=4, 3, 2, z=1, 3, 5). For comparison of relative stability, a relative stabilization energy D is defined as D=E([M(CO)_n]^z−)−nE(CO). The calculated C–O distances are lengthened monotonously with the increase of the anionic charge, but the M–C distances are significantly lengthened only in the higher reduced states. The relative stabilization energy calculated is a considerable negative value in the lower reduced states, but a larger positive value in the higher reduced states. The DFT calculations show that with the increase of the anionic charge, the Mulliken net charges on the M, C, and O atoms all increase, however, an excess of the anionic charge is mainly located at the central metal atom. The calculated C–O Mulliken bond orders decrease consistently with the increase of the anionic charge, but the M–C bond orders exhibit an irregular behavior. However, the total bond orders calculated clearly explain the higher reduced states to be considerably unstable. From analysis of the calculated results, it is deduced that the stability of the binary transition metal carbonyl anions [M(CO)_n]^z− studied are associated with the coordination number n and the anionic charge z, further, it is possible for the anions studied to be stable if n≥z, conversely, it is impossible when n<z.     

溴酸钾氧化亮绿SF催化光度法测定痕量亚硝酸根

本文基于亚硝酸根对溴酸钾氧化亮绿ＳＦ而使其褪色所起的催化作用，建立了高灵敏度催化吸光光度法测定痕量亚硝酸根的新方法，测定范围为０．０５－２０ｎｇ／ｍｌ，用于不同水样中亚硝酸根的测定，获得了满意结果。     

聚N,N-二乙基丙烯酰胺溶液粘度的温度依赖性

通过自由基聚合,合成了线型聚N,N-二乙基丙烯酰胺（PDEA）,用乌氏粘度计测定并考察了该聚合物在四氢呋喃（THF）、H2O以及THF-H2O混合溶剂中粘度的温度依赖性.实验结果表明,PDEA 在上述三种溶剂中粘度的温度依赖性不同，PDEA-THF体系的相对粘度随温度升高而增大；PDEA-H2O体系以及PDEA-THF-H2O体系的相对粘度随温度升高而减小,且THF体积分数φTHF < 0.7时具有透明-白浊转变现象；对PDEA-THF-H2O体系,φTHF增加,透明-白浊转变温度升高,而当φTHF=0.7时,则观察不到透明-白浊转变现象.     

Synthesis,spectroscopic characterisation and structure of the first chiral heteroleptic bis(phthalocyaninato) rare earth complexes

Treatment of MIII(Pc)(acac) (M = Sm, Eu, Gd; Pc = phthalocyaninate; acac = acetylacetonate), generated in situ, with 3-(3-pentyloxy)phthalonitrile in the presence of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) in n-pentanol affords racemic mixtures of the chiral double-deckers MIII(Pc)[Pc(OC5H11)4] [Pc(OC5H11)4 = 1,8,15,22-tetrakis(3-pentyloxy)phthalocyaninate], which have been spectroscopically and structurally characterised.     

Thermodynamics and dynamics of metallic glass formers: their correlation for the investigation on potential energy landscape

Great progress has been made in basic features of the potential energy landscape (PEL) theoretically. The present work, however, attempts to cast new light on it from experimental aspects. By a survey of experimental data related to thermodynamics or dynamics of metallic glass-forming liquids, it is found that the increased rate of excitation of vibrational entropy at glass transition tends to increase the rate of generation of configurational part. Although for the type of metallic materials a generally positive relationship exists between the density of the energy minima at glass transition and the liquid fragility strength, just as expected, our main attention is paid to the phenomenon of the scattering of the slopes. Analysis shows that the phenomenon results from the different average height of energy barriers between minima near glass transition. Investigation on the PdNiP metallic system indicates that the mismatch entropy is a dominant factor in the barrier height: a large value of it results in low energy barriers. Our previous work on the AlNiCe system gives the support to this finding.     

Controlling theoretically total absorption in hybrid-cavity resonator with one graphene monolayer outside cavity

Total absorption is realized theoretically in a graphene-outside-cavity resonator. The structure is composed of the FP-Fano hybrid resonance cavity. Changing the thickness of grating exciting Fano resonance, the absorption-mode number can be tuned effectively. For the focused double-mode absorption, the resonances behave insensitively with the variation of chemical potential of graphene. Varying the geometry of grating can control the coupling extent of two modes. Also, by manipulating the period number of two-side multilayers around graphene, the absorption, shift and number of modes are governed.     

Structure-Activity Relationship, Cytotoxicity and Mode of Action of 2-Ester-substituted 1,5-Benzothiazepines as Potent Antifungal Agents

Our studies examined the structural features responsible for the antifungal activity of 2-ethoxycarbonyl-1,5- benzothiazepine （7a）. Three series of 1,5-benzothiazepine derivatives were synthesized and screened for their antifungal activity. The results suggested that the ethoxycarbonyl group at the 2 position and the imine moiety on the seven-membered ring are essential for activity. The most potent of the synthesized analogues （7a, 7b） were further studied by evaluating their cytotoxicity and mode of action （for 7a）. The results showed that compounds 7a and 7b were relatively safe for BV2 cells, but compound 7a interfered with Cryptococcus neoformans cell wall integrity by increasing the chitinase activity. Therefore, compound 7a was considered safe as an antifungal agent for animal cells.