2-Aminopurine: a probe of structural dynamics and charge transfer in DNA and DNA:RNA hybrids

Spectroscopic techniques are employed to probe relationships between structural dynamics and charge transfer (CT) efficiency in DNA duplexes and DNA:RNA hybrids containing photoexcited 2-aminopurine (Ap). To better understand the variety of interactions and reactions, including CT, between Ap and DNA, the fluorescence behavior of Ap is investigated in a full series of redox-inactive as well as redox-active assemblies. Thus, Ap is developed as a dual reporter of structural dynamics and base-base CT reactions in nucleic acid duplexes. CD, NMR, and thermal denaturation profiles are consistent with the family of DNA duplexes adopting a distinct conformation versus the DNA:RNA hybrids. Fluorescence measurements establish that the d(A)-r(U) tract of the DNA:RNA hybrid exhibits enhanced structural flexibility relative to that of the d(A)-d(T) tract of the DNA duplexes. The yield of CT from either G or 7-deazaguanine (Z) to Ap in the assemblies was determined by comparing Ap emission in redox-active G- or Z-containing duplexes to otherwise identical duplexes in which the G or Z is replaced by inosine (I), the redox-inactive nucleoside analogue. Investigations of CT not only demonstrate efficient intrastrand base-base CT in the DNA:RNA hybrids but also reveal a distance dependence of CT yield that is more shallow through the d(A)-r(U) bridge of the A-form DNA:RNA hybrids than through the d(A)-d(T) bridge of the B-form DNA duplexes. The shallow distance dependence of intrastrand CT in DNA:RNA hybrids correlates with the increased conformational flexibility of bases within the hybrid duplexes. Measurements of interstrand base-base CT provide another means to distinguish between the A- and B-form helices. Significantly, in the A-form DNA:RNA hybrids, a similar distance dependence is obtained for inter- and intrastrand reactions, while, in B-DNA, a more shallow distance dependence is evident with interstrand CT reactions. These observations are consistent with evaluations of intra- and interstrand base overlap in A- versus B-form duplexes. Overall, these data underscore the sensitivity of CT chemistry to nucleic acid structure and structural dynamics.     

Distribution of CdSe quantum dots within swollen polystyrene microgel particles using confocal microscopy

CdSe quantum dots (QDs) are semiconducting nanoparticles that fluoresce when stimulated by visible light. This property has been exploited in their use as tracer particles in biomedical applications. In this study, confocal microscopy has been used to determine the distribution of QDs within polystyrene microgel particles, dispersed in an organic solvent. It was found that the extent of microgel swelling affected the penetration of the QDs into the particles. Only when the microgel particles were swollen to their maximum extent were the QDs able to penetrate into the central core region of the particles.     

Das Reaktionsverhalten von Cp2NbCl2 gegenüber WF6—Struktur von [Cp2NbCl2]4[WF6]2[WCl6]

The oxidation of Cp₂NbCl₂ with pure WF₆ in SO₂ solution yielded the cationic metallocene species [Cp₂NbCl₂]⁺[WF₆]⁻ essentially in quantitative yield. The same reaction carried out in the presence of either equimolar amounts or a two-fold excess of HCN led to the preparation of the new niobocenium salt [Cp₂NbCl₂]₄⁺[WF₆]²⁻ which was studied by single crystal X-ray diffraction. This compound represents the first example of a structurally characterized metallocene-WF₆⁻ complex, and crystallizes in the tetragonal system: space group, P4₁2₁2(No. 92), a = 11.083(8) Å, c = 48.285 (9) Å; Z = 8; R = 0.0759, R_W = 0.0841. ab]Die Oxidation von Cp₂NbCl₂ mit reinem WF₆ führt in SO₂-Lösung zur Synthese von [Cp₂NbCl₂ ]⁺[WF₆]⁻ in nahezu quantitativer Ausbeute. Die analoge Reaktion führt unter Anwesenheit der äquimolaren Menge oder eines zweifachen Überschusses an HCN zur Ausbildung des Niobocenium-Komplexsalzes [Cp₂NbCl₂]₄⁺ [WF₆]₂⁻[WCl₆]²⁻, von dem eine Röntgenstrukturanalyse angefertigt wurde. Diese Verbindung repräsentiert den ersten structurell charakterisierten Vertreter eines Metallocen-WF₆⁻-Komplexes und kristallisiert im tetragonalen System: Raumgruppe P4₁2₁2 (Nr. 92), a = 11.083(8) Å, c = 48.285(9) Å; Z = 8; R = 0.0759, R_W = 0.0841. kw]Niobium; X-ray diffraction; Oxidation; Metallocenes     

Multi‐stage high order semi‐Lagrangian schemes for incompressible flows in Cartesian geometries

Efficient transport algorithms are essential to the numerical resolution of incompressible fluid‐flow problems. Semi‐Lagrangian methods are widely used in grid based methods to achieve this aim. The accuracy of the interpolation strategy then determines the properties of the scheme. We introduce a simple multi‐stage procedure, which can easily be used to increase the order of accuracy of a code based on multilinear interpolations. This approach is an extension of a corrective algorithm introduced by Dupont & Liu (2003, 2007). This multi‐stage procedure can be easily implemented in existing parallel codes using a domain decomposition strategy, as the communication pattern is identical to that of the multilinear scheme. We show how a combination of a forward and backward error correction can provide a third‐order accurate scheme, thus significantly reducing diffusive effects while retaining a non‐dispersive leading error term. Copyright © 2016 John Wiley & Sons, Ltd.     

Selective Cross-Coupling of Unsaturated Substrates on AlI

The Al^I compound NacNacAl ( 1 , NacNac = [ArNC(Me)CHC(Me)NAr]⁻, Ar = 2,6-iPr₂C₆H₃) serves as a template for the chemoselective coupling between carbonyls (benzophenone, fenchone, isophorone, p-tolyl benzoate, N,N-dimethylbenzamide, (1-phenylethylidene)aniline) and pyridine. With the CH-acidic ketone (1R)-(+) camphor, the reaction affords a hydrido alkoxide compound of Al, formed as the result of enolization, whereas an enolizable imine, (1-phenylethylidene)aniline, and the bulky ketone isophorone, still chemoselectively couple with pyridine. In contrast, reaction with the ester p-tolyl benzoate results in cleavage of the ester bond together with replacement of the alkoxy group by a hydrogen atom of the pyridine moiety. This study demonstrates that for carbonyl substrates featuring phenyl substituents, the reaction proceeds via intermediate formation of η²(C,X)-coordinated (X = O, N) carbonyl adducts, whereas the reaction of 1 with (R)-(−)-fenchone in the absence of pyridine leads to CH activation in the pendant isopropyl group of the Ar substituent of the NacNac ligand.